Paper · 2026 · Frontiers in Plant Science

Integrated omics analysis on organic fertilizer-mediated regulation of starch synthesis in cassava

Jiongyu Chen; Zizhou Huang; Lijun Wei; et al.

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verbatim quotes
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citations
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Open access · cc-by

Abstract

Crantz) is a vital food security crop and industrial feedstock worldwide. Although the excessive use of chemical fertilizers threatens soil health and sustainable agriculture, organic amendments provide an environmentally friendly alternative. In this study, organic fertilizer (chicken manure) was set as treatment and chemical fertilizer as control. The regulatory mechanisms of mature cassava starch synthesis were initially elucidated by integrating agronomic traits, physiological indices, and transcriptome-metabolome analyses. The results showed that organic fertilizer significantly enlarged the leaf xylem cell area, effectively promoting nutrient uptake and utilization. It also markedly improving leaf photosynthetic assimilation and root starch synthesis. Ultimately, organic fertilizer increased cassava yield by 13.72%-26.08% and starch content by 9.90%-11.21%. Combined omics analysis revealed that organic fertilizer modulates stress-related pathways through multiple mechanisms, including elevated levels of caffeoylshikimic acid and caffeoylquinic acid, upregulating genes related to glutathione metabolism, and downregulating β-1, 3-glucanase genes. In conclusion, organic fertilizer promotes photosynthetic assimilation and starch synthesis in cassava through multiple mechanisms. These effects lead to simultaneous increases in storage root yield and starch content.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Organic fertilizer enlarged cassava leaf xylem cell area.

Treatment
organic fertilizere0
Outcome
leaf xylem cell areae0
Direction
enlargede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“cassava”

✓ located verbatim in the source · title, characters 91–98 · show in text ↑
e0

“organic fertilizer significantly enlarged the leaf xylem cell area”

✓ located verbatim in the source · abstract, characters 558–624 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer promoted nutrient uptake and utilization in cassava.

Treatment
organic fertilizere1
Outcome
nutrient uptake and utilizatione0
Direction
promotinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“cassava”

✓ located verbatim in the source · title, characters 91–98 · show in text ↑
e0

“effectively promoting nutrient uptake and utilization”

✓ located verbatim in the source · abstract, characters 626–679 · show in text ↑
e1

“organic fertilizer significantly enlarged the leaf xylem cell area”

✓ located verbatim in the source · abstract, characters 558–624 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer improved leaf photosynthetic assimilation in cassava.

Treatment
organic fertilizert0
Outcome
leaf photosynthetic assimilatione0
Direction
improvinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“organic fertilizer-mediated regulation of starch synthesis in cassava”

✓ located verbatim in the source · title, characters 29–98 · show in text ↑
e0

“markedly improving leaf photosynthetic assimilation and root starch synthesis”

✓ located verbatim in the source · abstract, characters 689–766 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer improved root starch synthesis in cassava.

Treatment
organic fertilizert0
Outcome
root starch synthesise0
Direction
improvinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“organic fertilizer-mediated regulation of starch synthesis in cassava”

✓ located verbatim in the source · title, characters 29–98 · show in text ↑
e0

“markedly improving leaf photosynthetic assimilation and root starch synthesis”

✓ located verbatim in the source · abstract, characters 689–766 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer increased cassava yield by 13.72%-26.08%.

Treatment
organic fertilizere0
Outcome
cassava yielde0
Direction
increasede0
Value
13.72%-26.08%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“organic fertilizer increased cassava yield by 13.72%-26.08% and starch content by 9.90%-11.21%”

✓ located verbatim in the source · abstract, characters 780–874 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer increased cassava starch content by 9.90%-11.21%.

Treatment
organic fertilizere0
Outcome
starch contente0
Direction
increasede0
Value
9.90%-11.21%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“organic fertilizer increased cassava yield by 13.72%-26.08% and starch content by 9.90%-11.21%”

✓ located verbatim in the source · abstract, characters 780–874 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic fertilizer elevated caffeoylshikimic acid and caffeoylquinic acid levels in cassava.

Treatment
organic fertilizere0
Outcome
levels of caffeoylshikimic acid and caffeoylquinic acide0
Direction
elevatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“cassava”

✓ located verbatim in the source · title, characters 91–98 · show in text ↑
e0

“organic fertilizer modulates stress-related pathways through multiple mechanisms, including elevated levels of caffeoylshikimic acid and caffeoylquinic acid”

✓ located verbatim in the source · abstract, characters 914–1070 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Organic fertilizer upregulated genes related to glutathione metabolism in cassava.

Treatment
organic fertilizere1
Outcome
genes related to glutathione metabolisme0
Direction
upregulatinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“cassava”

✓ located verbatim in the source · title, characters 91–98 · show in text ↑
e0

“upregulating genes related to glutathione metabolism”

✓ located verbatim in the source · abstract, characters 1072–1124 · show in text ↑
e1

“organic fertilizer modulates stress-related pathways”

✓ located verbatim in the source · abstract, characters 914–966 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Organic fertilizer downregulated β-1, 3-glucanase genes in cassava.

Treatment
organic fertilizere1
Outcome
β-1, 3-glucanase genese0
Direction
downregulatinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Manihot esculenta
Manihot esculenta · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

t0

“cassava”

✓ located verbatim in the source · title, characters 91–98 · show in text ↑
e0

“downregulating β-1, 3-glucanase genes”

✓ located verbatim in the source · abstract, characters 1130–1167 · show in text ↑
e1

“organic fertilizer modulates stress-related pathways”

✓ located verbatim in the source · abstract, characters 914–966 · show in text ↑

fertilization · molecular: metabolites · Manihot esculenta (cassava)Results differ

17 papers: 11 positive, 6 negative or no effect

10 papers in the same direction as this paper · 6 in the opposite direction

  1. negative
  2. negative
  3. no effect

13 papers more in this group

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fertilization · quality: sugar starch · Manihot esculenta (cassava)Positive and negative results

26 papers: 22 positive, 4 negative or no effect

21 papers in the same direction as this paper · 4 in the opposite direction

  1. negative
  2. no effect
  3. no effect

22 papers more in this group

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fertilization · nutrient: content · Manihot esculenta (cassava)Positive and negative results

42 papers: 39 positive, 3 negative or no effect

38 papers in the same direction as this paper · 3 in the opposite direction

  1. no effect
  2. no effect
  3. negative

38 papers more in this group

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fertilization · yield · Manihot esculenta (cassava)Positive and negative results

153 papers: 141 positive, 12 negative or no effect

140 papers in the same direction as this paper · 10 in the opposite direction · 2 reporting no difference from an alternative

  1. negative
  2. no effect
  3. no effect

149 papers more in this group

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fertilization · physiology: photosynthesis · Manihot esculenta (cassava)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.