Paper · 2026 · Frontiers in Plant Science

Editorial: Plant responses to abiotic stress: unraveling complex mechanisms through genomics and physiology

Mizanur Rahman; Takashi Asaeda; Md Harun Rashid

11
claims
17
verbatim quotes
0
citations
3
research areas
✓
Open access · cc-by

Abstract

for the role of maintenance of photosynthetic integrity as a key determinant of stress tolerance. Hormonal signalling and stress-responsive regulatory pathways were also identified as important mediators of plant adaptation. Chen et al. showed that hybrid Pennisetum heat stress activates α-linolenic acid metabolism and jasmonic acid biosynthesis, and exogenous jasmonic acid promotes thermotolerance as well as the maintenance of chlorophyll content and water content under elevated temperature. In support of these observations, the review concerning Late embryogenesis abundant (LEA) proteins and abscisic acid (ABA) signalling provided another example of the interplay between ABAmediated signalling and synthesis/accumulation of LEA proteins for stress adaption (Hao et al.). The review proposed a unifying framework in which the ABA signaling, the transcriptional activation process, osmotic adjustment response, membrane stabilization and molecular chaperone functions all synergistically act together to enhance stress tolerance. These studies provide insight into how hormonal signaling pathways coordinate the perception of environmental stress through feedback with downstream physiological and molecular events. Ion homeostasis and membrane transport under salinity stress is another major theme of this research topic. he activatable salt tolerance marker, the mulberry Morus notabilis Salt Overly Sensitive 3 (MnSOS3) protein was shown to regulate Na⁺/K⁺ homeostasis enhancing (Salt Overly Sensitive) SOS signalling pathway through salinity-induced plasma membrane localization (Liu et al.). Similarly, Gong et al. identified and characterized chloride channel gene family members in potato and showed that multiple (solanum tuberosum Chloride Channel) StCLC genes are strongly induced under salt stress, particularly in roots, suggesting important functions in chloride transport and ionic balance. In summary, these studies underscore the pivotal participation of transport systems that associate with membranes within plant adaptation to salinity. Various molecular approaches such as transcriptomics and multi-omics also featured prominently in the studies described within this topic. In an extensive comparative transcriptomic analysis, contrasting rice genotypes were found to adopt distinct response strategies in terms of iron transport/deficiency and homeostasis under low available iron environments. In fenugreek, genome-wide transcriptome analysis revealed differentially expressed genes that were involved in flavonoid biosynthesis, hormone signal transduction pathways, antioxidant defence mechanisms and carbohydrate metabolism (Wang et al.). Similarly, integrated transcriptomic and metabolomic analyses of red-leaf cotton revealed extensive dynamic regulation of the biosynthesis of flavonoids and accumulation of anthocyanins in response to both drought and re watering at specific developmental stages with observable metabolic recovery. Together, these studies show the relevance of systems-level approaches to connect gene expression with physiologic and metabolic response to stress (Zhang et al.).Apart from molecular and biochemical responses a few studies focus on the importance of structural and physiological adaptation. Genome-wide analysis of GDSL lipase family genes revealed the potential contribution of stomatal outer cuticular ledge development in regulating water-loss and drought tolerance in Dendrobium catenatum, highlighting a general procedure for adaptively modifying the epidermal cuticular features during stress conditions (Tang et al.). Moreover, investigations analysing stomatal adaptability, chloroplast arrangement and leaf histological variation confirmed that stress tolerance includes the simultaneous responses operating at cell, tissue, and plant level (Tang et al.). As a whole, the articles featured in this research topic confirm that abiotic stress tolerance in plants is a surprisingly complex and active process requiring integration of distal mechanisms including redox regulation, hormone signaling, photosynthetic protection, ion transport ability metabolic reprogramming transcriptional reprogramming and structural adaptation (Figure 1). The integration of physiology with genomics, transcriptomics, metabolomics, and functional validation approaches provides valuable opportunities for identifying key regulatory hubs associated with stress resilience. Future studies should be pursued toward the integration of multi-omics technologies with field-based phenotyping, gene functional validation and precision breeding approaches in order to capture adaptive/trait responses of plants under realistic growth conditions. A larger focus should also be on identification of conserved pathways that mediate stress response to multiple abiotic stresses in eco-evolutionary circumstances while acknowledging species-and even tissue-specific adaptive mechanisms. Such integrative approaches will be essential for developing crops capable of maintaining productivity under increasingly unpredictable climatic conditions. In conclusion, this research topic sheds light on plant responses to abiotic stresses and acclaimed biological plasticity of physiological, molecular or biochemical adaptation strategies. In combination with the following studies, these ensure that we have gained insight into plant mechanisms for maintaining cell homeostasis or stomatal opening under some environmental constraints while others are able to protect photosynthetic systems and coordinate ion transport pathways at cellular level or signalled together as a network of responses to stress. Such advances would lay a critical foundation for future efforts to better equipped crops and characteristics that sustain agriculture in the global climate change context. Keywords: abiotic stress; plant stress physiology; oxidative stress; redox homeostasis; stress-responsive signaling; multi-omics integration List of Figure Figure 1. Integrated physiological and molecular mechanisms underlying plant adaptation to abiotic stress (Created in BioRender. Mizanur Rahman (2026) https://BioRender.com/5i90djl) Conceptual basis for the physiological, molecular, biochemical and structural processes by which plants adapt to abiotic stresses. Drought, salinity, flooding, heat and nutrient deficiency can each activate interconnected array of regulatory networks including those involved in redox homeostasis, hormonal signaling, ion transport, photosynthetic protection, transcriptomic reprogramming metabolic remodeling and structural adaptation to compensate for the stress., thereby determining crop resistance to climateinduced stresses.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Intervention effectobservedreview summarypositivemeasured

Claim · model-written summary

Exogenous jasmonic acid promoted thermotolerance and maintained chlorophyll and water content of hybrid Pennisetum under elevated temperature

Taxon
hybrid PennisetumPennisetume0
Treatment
exogenous jasmonic acide1
Outcome
thermotolerancee1
Direction
promotese1
Qualifier
under elevated temperaturee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Pennisetum
Pennisetum · Taxon · picture of the genus (one of its species)J.M.Garg · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“hybrid Pennisetum heat stress activates α-linolenic acid metabolism and jasmonic acid biosynthesis”

✓ located verbatim in the source · abstract, characters 249–347 · show in text ↑
e1

“exogenous jasmonic acid promotes thermotolerance as well as the maintenance of chlorophyll content and water content under elevated temperature”

✓ located verbatim in the source · abstract, characters 353–496 · show in text ↑
Mechanismauthor interpretationreview summarypositivebasis n/a

Claim · model-written summary

ABA signalling, osmotic adjustment, membrane stabilization and chaperone functions were proposed to act together to enhance stress tolerance in plants

Taxon
plantsViridiplantaee1
Outcome
stress tolerancee0
Qualifier
osmotic adjustment response, membrane stabilization and molecular chaperone functionse0

Verbatim

e0

“The review proposed a unifying framework in which the ABA signaling, the transcriptional activation process, osmotic adjustment response, membrane stabilization and molecular chaperone functions all synergistically act together to enhance stress tolerance”

✓ located verbatim in the source · abstract, characters 782–1037 · show in text ↑
e1

“abiotic stress tolerance in plants is a surprisingly complex and active process”

✓ located verbatim in the source · abstract, characters 3909–3988 · show in text ↑
Mechanismobservedreview summarypositivemeasured

Claim · model-written summary

Mulberry MnSOS3 protein regulates Na+/K+ homeostasis through salinity-induced plasma membrane localization

Taxon
Morus notabilisMorus notabilise0
Gene
MnSOS3e0
Outcome
Na⁺/K⁺ homeostasise0
Qualifier
salinity-induced plasma membrane localizatione1

Verbatim

e0

“the mulberry Morus notabilis Salt Overly Sensitive 3 (MnSOS3) protein was shown to regulate Na⁺/K⁺ homeostasis”

✓ located verbatim in the source · abstract, characters 1371–1481 · show in text ↑
e1

“through salinity-induced plasma membrane localization”

✓ located verbatim in the source · abstract, characters 1539–1592 · show in text ↑
Intervention effectobservedreview summarymeasured

Claim · model-written summary

StCLC chloride channel genes of potato are strongly induced under salt stress, particularly in roots

Organ / stage
rootse0
Treatment
salt stresse0
Gene
StCLCe0
Outcome
StCLC genese0
Direction
strongly inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Gong et al. identified and characterized chloride channel gene family members in potato and showed that multiple (solanum tuberosum Chloride Channel) StCLC genes are strongly induced under salt stress, particularly in roots”

✓ located verbatim in the source · abstract, characters 1618–1841 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Contrasting rice genotypes adopt distinct response strategies for iron transport, deficiency and homeostasis under low available iron

Material
contrasting rice genotypese0
Treatment
low available irone0
Outcome
response strategies in terms of iron transport/deficiency and homeostasise0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“contrasting rice genotypes were found to adopt distinct response strategies in terms of iron transport/deficiency and homeostasis under low available iron environments”

✓ located verbatim in the source · abstract, characters 2258–2425 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Fenugreek transcriptome analysis revealed differentially expressed genes in flavonoid, hormone, antioxidant and carbohydrate metabolism pathways

Outcome
differentially expressed genese0
Qualifier
flavonoid biosynthesis, hormone signal transduction pathways, antioxidant defence mechanisms and carbohydrate metabolisme0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trigonella foenum-graecum
Trigonella foenum-graecum · TaxonYak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In fenugreek, genome-wide transcriptome analysis revealed differentially expressed genes that were involved in flavonoid biosynthesis, hormone signal transduction pathways, antioxidant defence mechanisms and carbohydrate metabolism”

✓ located verbatim in the source · abstract, characters 2427–2658 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Red-leaf cotton showed dynamic regulation of flavonoid biosynthesis and anthocyanin accumulation under drought and re-watering at specific developmental stages

Taxon
red-leaf cottone0
Organ / stage
specific developmental stagese0
Treatment
drought and re wateringe0
Outcome
biosynthesis of flavonoids and accumulation of anthocyaninse0

Verbatim

e0

“integrated transcriptomic and metabolomic analyses of red-leaf cotton revealed extensive dynamic regulation of the biosynthesis of flavonoids and accumulation of anthocyanins in response to both drought and re watering at specific developmental stages”

✓ located verbatim in the source · abstract, characters 2685–2936 · show in text ↑
Mechanismauthor interpretationreview summarypositivemeasured

Claim · model-written summary

GDSL lipase family genes may contribute to stomatal outer cuticular ledge development that regulates water loss and drought tolerance in Dendrobium catenatum

Taxon
Dendrobium catenatumDendrobium catenatume0
Gene
GDSL lipase family genese0
Outcome
water-loss and drought tolerancee0
Qualifier
stomatal outer cuticular ledge developmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dendrobium catenatum
Dendrobium catenatum · Taxonsnotch from Sapporo, Hokkaido, Japan · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Genome-wide analysis of GDSL lipase family genes revealed the potential contribution of stomatal outer cuticular ledge development in regulating water-loss and drought tolerance in Dendrobium catenatum”

✓ located verbatim in the source · abstract, characters 3265–3466 · show in text ↑
Observationobservedreview summarypositivemeasured

Claim · model-written summary

Stomatal adaptability, chloroplast arrangement and leaf histology show that stress tolerance involves responses at cell, tissue and plant level

Taxon
plantsViridiplantaee1
Outcome
stress tolerancee0
Qualifier
stomatal adaptability, chloroplast arrangement and leaf histological variatione0

Verbatim

e0

“investigations analysing stomatal adaptability, chloroplast arrangement and leaf histological variation confirmed that stress tolerance includes the simultaneous responses operating at cell, tissue, and plant level”

✓ located verbatim in the source · abstract, characters 3609–3823 · show in text ↑
e1

“abiotic stress tolerance in plants is a surprisingly complex and active process”

✓ located verbatim in the source · abstract, characters 3909–3988 · show in text ↑
Recommendationauthor interpretationreview summarybasis n/a

Claim · model-written summary

Future studies should integrate multi-omics with field phenotyping, gene validation and precision breeding to develop crops that keep productivity

Taxon
cropse1
Outcome
integration of multi-omics technologies with field-based phenotypinge0

Verbatim

e0

“Future studies should be pursued toward the integration of multi-omics technologies with field-based phenotyping, gene functional validation and precision breeding approaches”

✓ located verbatim in the source · abstract, characters 4436–4610 · show in text ↑
e1

“developing crops capable of maintaining productivity”

✓ located verbatim in the source · abstract, characters 4987–5039 · show in text ↑

schema checkedfield values found in the cited quotesPermalinkReport an issue

Recommendationauthor interpretationreview summarybasis n/a

Claim · model-written summary

Identification of conserved pathways mediating stress response to multiple abiotic stresses should be a larger focus of future work

Taxon
plantsViridiplantaee2
Outcome
identification of conserved pathways that mediate stress responsee0

Verbatim

e0

“A larger focus should also be on identification of conserved pathways that mediate stress response to multiple abiotic stresses”

✓ located verbatim in the source · abstract, characters 4701–4828 · show in text ↑
e2

“abiotic stress tolerance in plants is a surprisingly complex and active process”

✓ located verbatim in the source · abstract, characters 3909–3988 · show in text ↑

schema checkedfield values found in the cited quotesPermalinkReport an issue