Paper · 2015 · Organic Eprints (International Centre for Research in Organic Food Systems, and Research Institute of Organic Agriculture)

BIO-INCROP - Final report

L. Manici

20
claims
33
verbatim quotes
0
citations
4
research areas
✓
Open access

Abstract

APPLE • Apple replant disease in central Europe has a consistent biotic origin which is responsible for about 30% of growth reduction in multi-generation orchards. Cylindrocarpon-like fungi and Pythium spp. were shown to be primarily responsible for plant growth reduction, which was confirmed as main indicator of apple replant disease. • Pyrosequencing analysis of rhizospheric microbial communities associated to replanted orchards confirmed that Cylindrocarpon-like fungi are largely associated to replant disease; however, it also evidenced that several bacterial and fungal genera indigenous to replanted orchards are positively correlated to plant growth. This suggested that many are the indigenous resource to be exploited for increasing plant growth/soil health in permanent cropping systems. • Pre-plant treatment with locally available composts of different origin showed a variable effect in plant growth. Composted mushroom substrate gave the best performance in four countries involved in the evaluation. The phytotoxicity effect, due to high salt content in composts, represents a limit that can be overcome by setting up suitable amendment doses. • Cover crops in pre-plant can induce microbial changes at the rhizosphere level of the subsequent apple orchards, despite soil microbial resilience due to long-term management of soil. However, one only pre-plant break with cover crop is not sufficient to mitigate replant disease in the subsequent newly planted trees. • Commercially available bio-formulates in each country involved in the project and selected for their common ingredients (Trichoderma spp., Bacillus, Paecilomyces and other strain active in biocontrol) did not result overall effective in reducing common apple replant disease, although two specific products out of ten selected in all cases gave the highest plant growth. To the contrary, two out of ten bio-formulates were effective in controlling Phytophthora cactorum attack. • Among the non-chemical options tested for reducing replant problems, soil steam application in pre-plant gave promising results after one-year field trials. CITRUS • Phytophthora citrophtora was mainly responsible for citrus degradation in Mediterranean countries. A study on conversion to organic cultivation performed in a large degraded citrus orchards in Valencia province (Spain) gave 25% of plants dead for Phytophthora attack within 2-year after transplant. • Growth response of newly planted trees to different soil management (including solarisation, cover crops and organic amendments) and the application of ten commercially available bioformulates (biofungicides, nematocides and biostimulants and active principles) in degraded citrus orchards was not significantly affected by any pre-plant treatments. • Techniques based on the application of organic matter shortly before replanting are not successful in total control of Phytophthora attack in citrus degraded orchards, but do reduce damage to soil organic matter and biological activity compared to more aggressive techniques such as solarisation. Vegetal covers appear to be very promising in this respect as they cause a large stimulation of biological activity in soil when applied to degraded orchards. • Soil enzymes were shown to be very useful indicators of changes in soil quality when converting degraded citrus to organic management in Mediterranean environment • Phytophthora citrophtora severity attack was successfully reduced by several bio-formulates commercially available in Turkey (especially those with Lactobacillus acidophilus and biologically active principles as their main ingredients) in controlled conditions using citrus rootstocks. However, findings of the project overall showed that, origin, type and condition of the replant soil strongly affect the effectiveness of the biological active formulate in controlling Phytophthora attack in newly planted citrus trees.

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Claims 20

Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Apple replant disease had a consistent biotic origin associated with about 30% growth reduction.

Outcome
growth reductione0
Value
30%e0
Setting
central Europee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Apple replant disease in central Europe has a consistent biotic origin which is responsible for about 30% of growth reduction in multi-generation orchards”

✓ located verbatim in the source · abstract, characters 8–162 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Cylindrocarpon-like fungi were a primary cause of reduced apple growth.

Interactor
Cylindrocarpon-like fungie0pathogen
Outcome
plant growth reductione0
Direction
reductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Cylindrocarpon-like fungi and Pythium spp. were shown to be primarily responsible for plant growth reduction”

✓ located verbatim in the source · abstract, characters 164–272 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Pythium spp. were a primary cause of reduced apple growth.

Interactor
Pythium spp.Pythiume0pathogen
Outcome
plant growth reductione0
Direction
reductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗
Pythium
Pythium · Interactor · picture of the genus (one of its species)Doc. RNDr. Josef Reischig, CSc. · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Cylindrocarpon-like fungi and Pythium spp. were shown to be primarily responsible for plant growth reduction”

✓ located verbatim in the source · abstract, characters 164–272 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Cylindrocarpon-like fungi were strongly associated with apple replant disease.

Interactor
Cylindrocarpon-like fungie0pathogen
Outcome
replant diseasee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Pyrosequencing analysis of rhizospheric microbial communities associated to replanted orchards confirmed that Cylindrocarpon-like fungi are largely associated to replant disease”

✓ located verbatim in the source · abstract, characters 340–517 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Several indigenous bacterial and fungal genera were positively correlated with apple growth.

Interactor
bacterial and fungal generae0symbiont
Outcome
plant growthe0
Direction
positively correlatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“several bacterial and fungal genera indigenous to replanted orchards are positively correlated to plant growth”

✓ located verbatim in the source · abstract, characters 551–661 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

Preplant composts had variable effects on apple growth.

Treatment
locally available compostse0
Outcome
plant growthe0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Pre-plant treatment with locally available composts of different origin showed a variable effect in plant growth”

✓ located verbatim in the source · abstract, characters 805–917 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Composted mushroom substrate performed best for apple growth in four countries.

Treatment
Composted mushroom substratee0
Outcome
best performancee0
Direction
beste0
Setting
four countriese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Composted mushroom substrate gave the best performance in four countries involved in the evaluation”

✓ located verbatim in the source · abstract, characters 919–1018 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

High compost salt content caused phytotoxicity in apple systems.

Outcome
phytotoxicity effecte0
Qualifier
high salt content in compostse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“The phytotoxicity effect, due to high salt content in composts, represents a limit”

✓ located verbatim in the source · abstract, characters 1020–1102 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Preplant cover crops changed the rhizosphere microbial community of subsequent apple orchards.

Treatment
Cover crops in pre-plante0
Outcome
microbial changese0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Cover crops in pre-plant can induce microbial changes at the rhizosphere level of the subsequent apple orchards”

✓ located verbatim in the source · abstract, characters 1166–1277 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

A single preplant cover crop break did not sufficiently mitigate apple replant disease.

Treatment
pre-plant break with cover crope0
Outcome
replant diseasee0
Direction
not sufficiente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“one only pre-plant break with cover crop is not sufficient to mitigate replant disease in the subsequent newly planted trees”

✓ located verbatim in the source · abstract, characters 1359–1483 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Commercial bioformulates were generally ineffective against apple replant disease.

Treatment
Commercially available bio-formulatese0
Outcome
apple replant diseasee0
Direction
did not result overall effectivee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Commercially available bio-formulates in each country involved in the project and selected for their common ingredients (Trichoderma spp., Bacillus, Paecilomyces and other strain active in biocontrol) did not result overall effective in reducing common apple replant disease”

✓ located verbatim in the source · abstract, characters 1487–1761 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Two of ten bioformulates gave the highest apple growth.

Treatment
two specific productse0
Outcome
plant growthe0
Direction
higheste0
Comparator
ten selectede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“two specific products out of ten selected in all cases gave the highest plant growth”

✓ located verbatim in the source · abstract, characters 1772–1856 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Two of ten bioformulates controlled Phytophthora cactorum attack in apple.

Treatment
two out of ten bio-formulatese0
Interactor
Phytophthora cactorumPhytophthora cactorume0pathogen
Outcome
Phytophthora cactorum attacke0
Direction
controllinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗
Phytophthora cactorum
Phytophthora cactorum · InteractorMary Ann Hansen · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two out of ten bio-formulates were effective in controlling Phytophthora cactorum attack”

✓ located verbatim in the source · abstract, characters 1875–1963 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Preplant soil steam gave promising results for apple replant problems after a one-year field trial.

Treatment
soil steam application in pre-plante0
Outcome
promising resultse0
Setting
field trialse0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Malus domestica
Malus domestica · TaxonW.carter · CC0 · Wikimedia Commons ↗

Verbatim

e0

“soil steam application in pre-plant gave promising results after one-year field trials”

✓ located verbatim in the source · abstract, characters 2036–2122 · show in text ↑
e1

“APPLE”

✓ located verbatim in the source · abstract, characters 0–5 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Phytophthora citrophtora was mainly responsible for citrus degradation in Mediterranean countries.

Taxon
citrusCitruse0
Interactor
Phytophthora citrophtorae0pathogen
Outcome
citrus degradatione0
Setting
Mediterranean countriese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Phytophthora citrophtora was mainly responsible for citrus degradation in Mediterranean countries”

✓ located verbatim in the source · abstract, characters 2133–2230 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Phytophthora attack killed 25% of transplanted citrus plants within two years in a degraded Valencia orchard.

Taxon
citrusCitruse0
Interactor
PhytophthoraPhytophthorae0pathogen
Outcome
plants dead for Phytophthora attacke0
Value
25%e0
Setting
Valencia province (Spain)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗
Phytophthora
Phytophthora · Interactor · picture of the genus (one of its species)Rasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“a large degraded citrus orchards in Valencia province (Spain) gave 25% of plants dead for Phytophthora attack within 2-year after transplant”

✓ located verbatim in the source · abstract, characters 2290–2430 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Preplant treatments did not significantly affect growth of newly planted citrus trees.

Taxon
citrusCitruse0
Treatment
pre-plant treatmentse0
Outcome
Growth responsee0
Direction
not significantly affectede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Growth response of newly planted trees to different soil management (including solarisation, cover crops and organic amendments) and the application of ten commercially available bioformulates (biofungicides, nematocides and biostimulants and active principles) in degraded citrus orchards was not significantly affected by any pre-plant treatments”

✓ located verbatim in the source · abstract, characters 2434–2782 · show in text ↑
Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

Organic matter before citrus replanting did not completely control Phytophthora attack.

Taxon
citrusCitruse0
Treatment
application of organic matter shortly before replantinge0
Interactor
PhytophthoraPhytophthorae0pathogen
Outcome
Phytophthora attacke0
Direction
not successful in total controle0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗
Phytophthora
Phytophthora · Interactor · picture of the genus (one of its species)Rasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Techniques based on the application of organic matter shortly before replanting are not successful in total control of Phytophthora attack in citrus degraded orchards”

✓ located verbatim in the source · abstract, characters 2786–2952 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic matter before replanting reduced damage to soil organic matter and biological activity relative to solarisation in citrus orchards.

Taxon
citrusCitruse1
Treatment
application of organic matter shortly before replantinge2
Outcome
damage to soil organic matter and biological activitye0
Direction
reducee0
Comparator
solarisatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“do reduce damage to soil organic matter and biological activity compared to more aggressive techniques such as solarisation”

✓ located verbatim in the source · abstract, characters 2958–3081 · show in text ↑
e1

“CITRUS”

✓ located verbatim in the source · abstract, characters 2124–2130 · show in text ↑
e2

“Techniques based on the application of organic matter shortly before replanting are not successful in total control of Phytophthora attack in citrus degraded orchards”

✓ located verbatim in the source · abstract, characters 2786–2952 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Commercial bioformulates reduced Phytophthora citrophtora attack in citrus rootstocks under controlled conditions.

Taxon
citrusCitruse0
Treatment
several bio-formulatese0
Interactor
Phytophthora citrophtorae0pathogen
Outcome
Phytophthora citrophtora severity attacke0
Direction
reducede0
Setting
controlled conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Phytophthora citrophtora severity attack was successfully reduced by several bio-formulates commercially available in Turkey (especially those with Lactobacillus acidophilus and biologically active principles as their main ingredients) in controlled conditions using citrus rootstocks”

✓ located verbatim in the source · abstract, characters 3409–3693 · show in text ↑

organic · pest · CitrusResults agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.