Search claims · PlantClaims

Observationobservedoriginal resultmeasured

Claim · model-written summary

Phenotypically similar bacteria and fungi occurred in multiple maize lines.

Taxon: maizeZea mayse0
Interactor: bacteriaBacteriae0symbiont
Second interactor: fungiFungie0symbiont
Outcome: phenotypically similar bacteria and fungi were isolated from multiple maize linese0

Verbatim

e0
“Several phenotypically similar bacteria and fungi were isolated from multiple maize lines”
✓ located verbatim in the source · abstract, characters 1658–1747

Title

Composition of the Maize Endophytic Microbiome is Correlated with Maize Genotype

Saha, Surya; Churchill, Alice; Mideros, Santiago Figshare 2013. doi:10.6084/m9.figshare.698247.v1

Other claims from this paper (7)

Observation Culturable bacteria were detected in approximately 65% of maize samples.
Observation Fungi were detected in 28% of maize samples.
Observation Both bacteria and fungi were detected in 22% of maize samples.
Observation Endophytes were undetectable in 28% of maize samples.
Association Tropical maize lines yielded more and more diverse fungi than temperate lines.
Observation Bacteria were isolated from every maize line.
Association Some maize lines had significantly greater microbial community diversity than others.

Observationobservedoriginal resultmeasured

Claim · model-written summary

S was phylogenetically and phenotypically similar to D.

Taxon: Corn and SoybeanGlycine max Zea mays subsp. mayst0
Material: S genotypee0
Outcome: phylogenetically and phenotypically similare0
Comparator: D genotypee0

Verbatim

e0
“The S genotype was found to be phylogenetically and phenotypically similar to the D genotype”
✓ located verbatim in the source · abstract, characters 1038–1130

t0
“Corn and Soybean”
✓ located verbatim in the source · title, characters 63–79

Title

Distribution and Biocontrol Potential of phlD⁺ Pseudomonads in Corn and Soybean Fields

Brian B. McSpadden Gardener; Laura J. Gutierrez; Raghavendra Joshi; et al. Phytopathology 2005. doi:10.1094/phyto-95-0715

Other claims from this paper (11)

Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

ravl1/d61-1 resembled ravl1 phenotypically.

Taxon: riceOryza sativat0
Material: ravl1/d61-1e0
Outcome: phenotypically similare0
Comparator: ravl1 mutante0

Verbatim

e0
“The double mutant ravl1/d61-1 was phenotypically similar to the ravl1 mutant.”
✓ located verbatim in the source · abstract, characters 510–587

t0
“Rice”
✓ located verbatim in the source · title, characters 105–109

Title

RAVL1 Activates Brassinosteroids and Ethylene Signaling to Modulate Response to Sheath Blight Disease in Rice

De Peng Yuan; Chong Zhang; Zi Yuan Wang; et al. Phytopathology 2018. doi:10.1094/phyto-03-18-0085-r

Other claims from this paper (8)

Observation d61-1 and d2 mutants were less susceptible than wild type.
Observation bri1-D was more susceptible than wild type.
Observation ravl1 and d61-1/EIL1 Ri5 were similarly susceptible to wild type.
Mechanism RAVL1 may directly activate EIL1.
Observation ers1 and d61-1/RAVL1 OX mutants resisted sheath blight.
Observation EIL1 RNAi mutants and RAVL1 OX were more susceptible than wild type.
Mechanism RAVL1 activates BRI1/D2 independently of BR signaling.
Mechanism RAVL1 activates EIL1 independently of ethylene signaling.

Observationobservedoriginal resultmeasured

Claim · model-written summary

OsMED16-edited rice lines were phenotypically similar to the spl38 mutant.

Taxon: riceOryza sativae1
Material: OsMED16-edited rice linese5
Outcome: phenotypically similare5
Comparator: the spl38 mutante5

Verbatim

e1
“Here, we identified a rice (Oryza sativa) LMM, spotted leaf 38 (spl38), and demonstrated that spl38 is essential for the formation of hypersensitive response-like lesions and innate immunity”
✓ located verbatim in the source · abstract, characters 131–321

e5
“The OsMED16-edited rice lines were phenotypically similar to the spl38 mutant but were extremely weak, exhibited growth retardation, and eventually died”
✓ located verbatim in the source · abstract, characters 641–793

Title

MEDIATOR SUBUNIT 16 negatively regulates rice immunity by modulating PATHOGENESIS RELATED 3 activity

Peng Zhang; Xiaoding Ma; Lina Liu; et al. PLANT PHYSIOLOGY 2023. doi:10.1093/plphys/kiad120

Other claims from this paper (14)

Mechanism The spl38 mutant is essential for hypersensitive response-like lesions and innate immunity.
Observation SPL38 encodes MEDIATOR SUBUNIT 16 (OsMED16).
Association The spl38 mutant showed enhanced resistance to Magnaporthe oryzae.
Association The spl38 mutant showed enhanced resistance to Xanthomonas oryzae pv. oryzae (Xoo).
Intervention effect OsMED16-overexpressing plants showed increased susceptibility to Magnaporthe oryzae.
Intervention effect OsMED16-edited rice lines showed growth retardation and were extremely weak.
Observation OsMED16-edited rice lines eventually died.
Intervention effect The ospr3 osmed16 double mutants did not exhibit the lesion mimic phenotype of the spl38 mutant.
Observation The C-terminus of OsMED16 interacts with OsPR3.
Mechanism OsMED16 competitively represses the chitinase and chitin-binding activities of OsPR3.
Association OsMED16 has an opposite function in plant defense relative to Arabidopsis AtMED16.
Mechanism The opposite defense function of OsMED16 is most likely due to two amino acid substitutions between monocot and dicot MED16s.
Mechanism OsMED16 negatively regulates cell death and immunity in rice, probably via the OsPR3-mediated chitin signaling pathway.
Observation The spl38 mutant exhibited delayed flowering.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Pea sym8 mutants phenotypically resemble Medicago truncatula dmi1 mutants.

Taxon: PeaLathyrus oleraceust0
Gene: sym8e0
Outcome: phenotypically similare0
Comparator: Medicago truncatula dmi1 mutantse0

Verbatim

t0
“Pea SYM8 Symbiosis Gene”
✓ located verbatim in the source · title, characters 44–67

e0
“The sym8 mutants are phenotypically similar to Medicago truncatula dmi1 mutants”
✓ located verbatim in the source · abstract, characters 372–451

Title

Structural Implications of Mutations in the Pea SYM8 Symbiosis Gene, the DMI1 Ortholog, Encoding a Predicted Ion Channel

Anne Edwards; Anne B. Heckmann; Faridoon Yousafzai; et al. Molecular Plant-Microbe Interactions 2007. doi:10.1094/mpmi-20-10-1183

Other claims from this paper (10)

Intervention effect Mutation of sym8 in R25 blocks nodulation, mycorrhization, and Nod-factor-induced calcium spiking.
Observation Four new pea sym8 alleles belong to the same complementation group as R25.
Observation Pea sym8 mutants map to a syntenic location.
Intervention effect The cloned pea DMI1 ortholog complements a Medicago truncatula dmi1 mutant for nodulation.
Observation All five pea sym8 mutants carry mutations in the DMI1 ortholog.
Observation The pea SYM8 gene is the DMI1 ortholog.
Observation A predicted SYM8 channel structure has four aspartate residues forming its opening.
Intervention effect Aspartate-to-valine mutation in the predicted filter region caused loss of function.
Intervention effect An alanine-to-valine missense mutation in the predicted filter region caused loss of function.
Observation An arginine-to-isoleucine missense mutation in a proposed linker domain caused loss of function.

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Taiwanese isolates were phenotypically similar with relatively low virulence on 36 oat differential lines.

Taxon: OatAvena sativat0
Interactor: Puccinia coronata var. avenae f. sp. avenaePuccinia coronata var. avenaee1pathogen
Outcome: relatively low virulencee0
Value: 36 oat differential linese0

Verbatim

e0
“Phenotyping assays across 36 oat differential lines demonstrated that Taiwanese isolates are phenotypically similar with relatively low virulence”
✓ located verbatim in the source · abstract, characters 1241–1386

t0
“Oat”
✓ located verbatim in the source · title, characters 16–19

e1
“Puccinia coronata var. avenae f. sp. avenae (Pca)”
✓ located verbatim in the source · abstract, characters 887–936

Title

Confirmation of Oat Crown Rust Disease in Taiwan

Chung-Ying Ho; Eva C. Henningsen; Ssu-Tung Chen; et al. Plant Disease 2024. doi:10.1094/pdis-04-24-0838-re

Other claims from this paper (3)

Observation A rust-like outbreak caused significant damage to oat field experiments.
Method / resource ITS phylogeny identified Taiwanese oat rust isolates as Pca.
Method / resource Whole genome phylogeny confirmed NTU1 clustering with other Pca strains.

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

CMM623 culture supernatant induced phenotypically similar necrosis.

Taxon: tobacco (Nicotiana tabacum)Nicotiana tabacume1
Treatment: cell-free culture supernatant from strain CMM623e0
Outcome: necrosise0
Direction: inducede0
Comparator: the bacteriae0

Verbatim

e0
“The cell-free culture supernatant from strain CMM623 also induced a necrosis that was phenotypically similar to that induced by the bacteria”
✓ located verbatim in the source · abstract, characters 278–418

e1
“tobacco (Nicotiana tabacum)”
✓ located verbatim in the source · abstract, characters 163–190

Title

Protein(s) from the Gram-Positive Bacterium Clavibacter michiganensis subsp. michiganensis Induces a Hypersensitive Response in Plants

C. Alarcón; J. Castro; F. Muñoz; et al. Phytopathology 1998. doi:10.1094/phyto.1998.88.4.306

Other claims from this paper (5)

Observation Clavibacter induced local necrosis on four-o'clock plants.
Observation Clavibacter induced local necrosis on tobacco plants.
Intervention effect Plant metabolism inhibitors suppressed necrosis in M. jalapa.
Intervention effect Plant metabolism inhibitors suppressed necrosis in tobacco.
Observation The supernatant HR-inducing activity was heat stable and protease sensitive, with apparent mass 35 to 50 kDa.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The bacterial strains isolated from red poppy were phenotypically highly similar to members of Enterobacteriaceae, in particular Erwinia piriflorinigrans.

Taxon: red poppyt0
Interactor: Erwinia piriflorinigransErwinia piriflorinigranse0pathogen
Outcome: high similarity to the members of Enterobacteriaceaee0

Verbatim

e0
“The bacterial strains phenotypically showed a high similarity to the members of Enterobacteriaceae, in particular Erwinia piriflorinigrans”
✓ located verbatim in the source · abstract, characters 331–469

t0
“red poppy”
✓ located verbatim in the source · title, characters 91–100

Title

Isolation and characterization of Erwinia piriflorinigrans causal agent flower necrosis of red poppy

Y. Moradi Amirabad; G. Khodakaramian Australasian Plant Pathology 2017. doi:10.1007/s13313-017-0513-0

Other claims from this paper (5)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty diseased Catalpa bungei leaves yielded 29 phenotypically similar purified fungal strains.

Taxon: Catalpa bungeiCatalpa bungeit0
Outcome: purified fungal strainse0
Value: 29e0

Verbatim

e0
“A total of 29 purified fungal strains were acquired, exhibiting comparable phenotypes in terms of morphological characteristics”
✓ located verbatim in the source · abstract, characters 976–1103

t0
“Catalpa bungei”
✓ located verbatim in the source · title, characters 58–72

Title

First Report of Alternaria alternata Causing Leaf Spot on Catalpa bungei in China

Shuchang Chen; Enping Zhou; Fei Dong; et al. Plant Disease 2024. doi:10.1094/pdis-01-24-0091-pdn

Other claims from this paper (7)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

The four coffee rhizosphere isolates resembled Pseudomonas phenotypically.

Taxon: coffeeCoffeat0
Interactor: PseudomonasPseudomonase0symbiont
Outcome: similar to the genus of Pseudomonase0

Verbatim

e0
“Phenotypic test indicated that the four isolates are similar to the genus of Pseudomonas.”
✓ located verbatim in the source · abstract, characters 1569–1658

t0
“Coffee Plant Rhizosphere”
✓ located verbatim in the source · title, characters 61–85

Title

The Ability of Phosphate Solubilizing Bacteria Isolated from Coffee Plant Rhizosphere and Their Effects on Robusta Coffee Seedlings

John Bako Baon; Sri Wedhastri; Andi Kurniawan Journal of Agricultural Science and Technology A 2012

Other claims from this paper (4)

“phenotypically similar”

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