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Method / resourceobservedoriginal resultpositivebasis n/a

Claim · model-written summary

The study provides systems-wide leaf transcriptome, proteome and metabolite datasets after illumination.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Organ / stage
leavest0
Outcome
systems-wide datasetse0

Not reportedComparatorValue

Verbatim

e0

“This study provides systems-wide datasets which allow plant researchers to examine the changes in leaf transcriptomes, proteomes and key metabolites upon illumination”

✓ located verbatim in the source · abstract, characters 1245–1411
t0

“Arabidopsis thaliana leaves”

✓ located verbatim in the source · title, characters 51–78

Title

Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

Chao Liang; Shifeng Cheng; Youjun Zhang; et al. BMC Plant Biology 2016. doi:10.1186/s12870-016-0726-3

Other claims from this paper (7)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The tea leaf transcriptome yielded 129610 non-redundant transcripts and 60361 unigenes.

Taxon
tea plantt0
Outcome
non‐redundant transcriptse0
Value
129610e0
Qualifier
60361 unigenese0

Verbatim

e0

“129610 non‐redundant transcripts and 60361 unigenes were obtained”

✓ located verbatim in the source · abstract, characters 413–478
t0

“tea plant”

✓ located verbatim in the source · title, characters 81–90

Title

Transcriptome changes and its effect on physiological and metabolic processes in tea plant during mechanical damage

X. Li; Y. Lin; S. Zhao; et al. Forest Pathology 2018. doi:10.1111/efp.12432

Other claims from this paper (7)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The xylem sap feeding bioassay detected leaf transcript changes from inoculated and uninoculated soybean donor plants.

Taxon
soybeanGlycine maxt0
Treatment
fed with xylem extractse0
Interactor
Bradyrhizobium japonicumBradyrhizobium japonicume0symbiont
Outcome
changes in the leaves of bioassay plantse0
Comparator
uninoculated plantse0

Verbatim

e0

“We identified changes in the leaves of bioassay plants fed with xylem extracts derived from either Bradyrhizobium japonicum-inoculated or uninoculated plants.”

✓ located verbatim in the source · abstract, characters 958–1116
t0

“soybean”

✓ located verbatim in the source · title, characters 40–47

Title

Identification of systemic responses in soybean nodulation by xylem sap feeding and complete transcriptome sequencing reveal a novel component of the autoregulation pathway

Dugald E. Reid; Satomi Hayashi; Michal Lorenc; et al. Plant Biotechnology Journal 2012. doi:10.1111/j.1467-7652.2012.00706.x

Other claims from this paper (5)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

A reference transcriptome of about 412,224 transcripts was assembled from around 262 million reads.

Taxon
Nepenthes khasianaNepenthes khasianat0
Outcome
reference transcriptomee0
Value
about 412,224 transcriptse0
Qualifier
around 262 million high-quality Illumina readse0

Verbatim

e0

“In total, we generated around 262 million high-quality Illumina reads. Reads were pooled, normalized and de novo assembled to generate a reference transcriptome of about 412,224 transcripts.”

✓ located verbatim in the source · abstract, characters 794–984
t0

“Nepenthes khasiana”

✓ located verbatim in the source · title, characters 12–30

Title

Pitchers of Nepenthes khasiana express several digestive-enzyme encoding genes, harbor mostly fungi and probably evolved through changes in the expression of leaf polarity genes

Jeremy Dkhar; Yogendra Kumar Bhaskar; Andrew Lynn; et al. BMC Plant Biology 2020. doi:10.1186/s12870-020-02663-2

Other claims from this paper (6)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Node transcriptome sequencing produced 58,509 unigenes.

Taxon
Antirrhinum majusAntirrhinum majuse1
Outcome
unigenese0
Value
58,509e0
Qualifier
86,315,782 high quality readse0

Verbatim

e0

“More than 86,315,782 high quality reads were sequenced and assembled into 58,509 unigenes”

✓ located verbatim in the source · abstract, characters 610–699
t0

“Antirrhinum”

✓ located verbatim in the source · title, characters 48–59
e1

“Antirrhinum majus undergoes drastic changes of shoot architecture during the phase change, including phyllotactic change and leaf type alteration from opposite decussate to spiral”

✓ located verbatim in the source · abstract, characters 152–331

Title

Comparative transcription analysis of different Antirrhinum phyllotaxy nodes identifies major signal networks involved in vegetative-reproductive transition

Dongliang Wang; Geyang Cao; Peng Fang; et al. PLoS ONE 2017. doi:10.1371/journal.pone.0178424

Other claims from this paper (6)
Method / resourceobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

The results improved Eucommia genome annotation.

Taxon
E. ulmoidesEucommia ulmoidese0
Outcome
annotation of the E. ulmoides genomee0
Direction
improvee0

Not reportedComparatorValue

Verbatim

e0

“In addition, our results significantly improve the annotation of the E. ulmoides genome.”

✓ located verbatim in the source · abstract, characters 1770–1858

Title

Dynamic Changes in Metabolite Accumulation and the Transcriptome during Leaf Growth and Development in Eucommia ulmoides

Long Li; Minhao Liu; Kan Shi; et al. International Journal of Molecular Sciences 2019. doi:10.3390/ijms20164030

Other claims from this paper (14)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

qRT-PCR confirmed the reliability of the RNA-seq results.

Outcome
reliability of the RNA-seq resultse6
Comparator
qRT-PCRe6

Verbatim

e6

“The reliability of the RNA-seq results was confirmed by qRT-PCR”

✓ located verbatim in the source · abstract, characters 1179–1242

Title

Physiological changes and transcriptome profiling in Saccharum spontaneum L. leaf under water stress and re-watering conditions

Changning Li; Zhen Wang; Qian Nong; et al. Scientific Reports 2021. doi:10.1038/s41598-021-85072-1

Other claims from this paper (8)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

69,020 transcripts were identified in Eucommia.

Taxon
E. ulmoidesEucommia ulmoidese0
Outcome
transcriptse0
Value
69,020e0

Verbatim

e0

“Based on single-molecule long-read sequencing technology, 69,020 transcripts and 2880 novel loci were identified in E. ulmoides.”

✓ located verbatim in the source · abstract, characters 1020–1148

Title

Dynamic Changes in Metabolite Accumulation and the Transcriptome during Leaf Growth and Development in Eucommia ulmoides

Long Li; Minhao Liu; Kan Shi; et al. International Journal of Molecular Sciences 2019. doi:10.3390/ijms20164030

Other claims from this paper (14)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

2880 novel loci were identified in Eucommia.

Taxon
E. ulmoidesEucommia ulmoidese0
Outcome
novel locie0
Value
2880e0

Verbatim

e0

“Based on single-molecule long-read sequencing technology, 69,020 transcripts and 2880 novel loci were identified in E. ulmoides.”

✓ located verbatim in the source · abstract, characters 1020–1148

Title

Dynamic Changes in Metabolite Accumulation and the Transcriptome during Leaf Growth and Development in Eucommia ulmoides

Long Li; Minhao Liu; Kan Shi; et al. International Journal of Molecular Sciences 2019. doi:10.3390/ijms20164030

Other claims from this paper (14)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

qRT-PCR validation of 20 DEGs in SSN and STN samples confirmed the transcriptomic results.

Taxon
Sorghum bicolorSorghum bicolort0
Outcome
transcriptomic resultse7
Value
20 DEGse7

Verbatim

t0

“Root and Leaf Anatomy, Ion Accumulation, and Transcriptome Pattern under Salt Stress Conditions in Contrasting Genotypes of Sorghum bicolor”

✓ located verbatim in the source · title, characters 0–139
e7

“Kyoto Encyclopaedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analysis unlocked the changes in metabolic pathways in response to salt stress. qRT-PCR was performed to validate 20 DEGs in each SSN and STN sample, which confirms the transcriptomic results. These results surmise that anatomical changes and higher K+/Na+ ratios are essential for mitigating salt stress in sorghum”

✓ located verbatim in the source · abstract, characters 1217–1614

Title

Root and Leaf Anatomy, Ion Accumulation, and Transcriptome Pattern under Salt Stress Conditions in Contrasting Genotypes of Sorghum bicolor

Appa Rao Karumanchi; Pramod Sivan; Divya Kummari; et al. Plants 2023. doi:10.3390/plants12132400

Other claims from this paper (14)

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