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Associationobservedoriginal resultmeasured

Claim · model-written summary

Two XTH transcripts were specifically down-regulated in the colonized soybean root pieces.

Taxon
soybeanGlycine maxe0
Organ / stage
colonized root piecese2
Gene
XTHe2
Outcome
XTH transcriptse2
Direction
down-regulatede2

Verbatim

e0

“excised soybean root pieces colonized by soybean cyst nematodes (SCN), Heterodera glycines”

✓ located verbatim in the source · abstract, characters 85–175
e2

“two XTH transcripts were specifically down-regulated in the colonized root pieces”

✓ located verbatim in the source · abstract, characters 1318–1399

Title

Gene expression profiles for cell wall-modifying proteins associated with soybean cyst nematode infection, petiole abscission, root tips, flowers, apical buds, and leaves

Mark L. Tucker; Aimee Burke; Charles A. Murphy; et al. Journal of Experimental Botany 2007. doi:10.1093/jxb/erm188

Other claims from this paper (3)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcripts of GA-20 Oxidase, XTH and PEPc were elevated in cotton fibers from 5 to 20 DPA.

Organ / stage
5 to 20 days post-anthesis (DPA) fiberse0
Gene
GA-20 Oxidase, XTH, and PEPce0
Outcome
transcriptse0
Direction
elevatede0

Verbatim

e0

“Expression analysis revealed that transcripts of GA-20 Oxidase, XTH, and PEPc were elevated from 5 to 20 days post-anthesis (DPA) fibers”

✓ located verbatim in the source · abstract, characters 545–681
t0

“Cotton”

✓ located verbatim in the source · title, characters 57–63

Title

Comparative Expression Studies of Fiber Related Genes in Cotton Spp.

Muhammad Nadeem; Nadia Iqbal; Ummara Waheed; et al. Journal of Bioresource Management 2021. doi:10.35691/jbm.1202.0173

Other claims from this paper (2)
Associationobservedoriginal resultmeasured

Claim · model-written summary

mRNA transcript levels of expansin and XTH genes correlated exclusively with petal growth.

Taxon
roset0
Organ / stage
petale2
Gene
expansine3
Outcome
mRNA transcripts levele2

Not reportedDirection

Verbatim

t0

“ROLE OF EXPANSIN AND XTH DURING ROSE FLOWER OPENING”

✓ located verbatim in the source · title, characters 0–51
e2

“The results showed that mRNA transcripts level exclusively correlated to petal growth”

✓ located verbatim in the source · abstract, characters 1004–1089
e3

“We have isolated three expansin cDNAs and four XTH cDNAs from rose petal”

✓ located verbatim in the source · abstract, characters 824–896

Title

ROLE OF EXPANSIN AND XTH DURING ROSE FLOWER OPENING

M. Ochiai; N. Takagaki; R. Takahashi; et al. Acta Horticulturae 2010. doi:10.17660/actahortic.2010.870.36

Other claims from this paper (1)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Several XTH transcripts were generally up-regulated in developing tension wood compared with normal wood in poplar.

Taxon
poplarPopuluse1
Organ / stage
developing tension woode3
Outcome
XTH transcriptse3
Direction
generally up-regulatede3
Comparator
normal woode3

Verbatim

e1

“isolated G-layers of poplar, we found that they contain some matrix components in addition to cellulose, of which xyloglucan is the most abundant”

✓ located verbatim in the source · abstract, characters 492–637
e3

“several XTH transcripts were altered and were generally up-regulated in developing tension wood compared with normal wood”

✓ located verbatim in the source · abstract, characters 1042–1163

Title

Xyloglucan Endo-transglycosylase (XET) Functions in Gelatinous Layers of Tension Wood Fibers in Poplar—A Glimpse into the Mechanism of the Balancing Act of Trees

Nobuyuki Nishikubo; Tatsuya Awano; Alicja Banasiak; et al. Plant and Cell Physiology 2007. doi:10.1093/pcp/pcm055

Other claims from this paper (6)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Both XTH transcripts accumulated at higher levels in somatic embryos than in the proembryogenic mass.

Taxon
cucumberCucumis sativust0
Organ / stage
somatic embryose3
Gene
Cs-XTH1 and Cs-XTH3e0
Outcome
accumulation of both transcriptse3
Direction
highere3
Comparator
proembryogenic masse3

Verbatim

t0

“cucumber (Cucumis sativus)”

✓ located verbatim in the source · title, characters 51–77
e0

“Cs-XTH1 and Cs-XTH3 genes, which encode XTH proteins, were found among numerous genes that are differentially expressed after the induction of cucumber somatic embryogenesis”

✓ located verbatim in the source · abstract, characters 255–428
e3

“We also observed higher accumulation of both transcripts in somatic embryos than in the proembryogenic mass”

✓ located verbatim in the source · abstract, characters 753–860

Title

Xyloglucan endotransglucosylase/hydrolase genes in cucumber (Cucumis sativus) – differential expression during somatic embryogenesis†

Robert Malinowski; Marcin Filipecki; Norikazu Tagashira; et al. Physiologia Plantarum 2004. doi:10.1111/j.0031-9317.2004.0289.x

Other claims from this paper (4)
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

One XTH is a candidate explanation for ethylene-induced expansion.

Taxon
grapet0
Gene
XTHe0
Outcome
ethylene-induced berry expansione0

Verbatim

e0

“One XTH and one AQUA seem to be good candidates to explain the ethylene-induced berry expansion.”

✓ located verbatim in the source · abstract, characters 1424–1520
t0

“grape”

✓ located verbatim in the source · title, characters 19–24

Title

Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase

Christian Chervin; Arak Tira‐umphon; Nancy Terrier; et al. Physiologia Plantarum 2008. doi:10.1111/j.1399-3054.2008.01158.x

Other claims from this paper (7)
Associationobservedoriginal resultmeasured

Claim · model-written summary

The steady state level of VrXTH1 transcripts was closely related to the elongation regions of mungbean hypocotyls.

Taxon
mungbeanVigna radiatae0
Organ / stage
elongation regions of hypocotylse2
Gene
VrXTH1e2
Outcome
steady state level of VrXTH1 transcriptse2

Not reportedDirection

Verbatim

e0

“we identified an XTH, VrXTH1, in the mungbean”

✓ located verbatim in the source · abstract, characters 224–269
e2

“The steady state level of VrXTH1 transcripts was closely related to the elongation regions of hypocotyls”

✓ located verbatim in the source · abstract, characters 647–751

Title

A xyloglucan endotransglycosylase/hydrolase1, VrXTH1, is associated with cell elongation in mungbean hypocotyls

Hye Sup Yun; Chian Kwon; Bin Goo Kang; et al. Physiologia Plantarum 2005. doi:10.1111/j.1399-3054.2005.00536.x

Other claims from this paper (6)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Celery XTH1 transcripts previously accumulated systemically in phloem after Myzus persicae infestation.

Organ / stage
phloeme0
Interactor
Myzus persicaeMyzus persicaee0pest
Gene
celery XTH1e0
Outcome
Transcripts of the celery XTH1 genee0
Direction
accumulatee0

Verbatim

e0

“Transcripts of the celery XTH1 gene, encoding a xyloglucan endotransglycosylase/hydrolase (XTH), were previously found to accumulate systemically in celery (Apium graveolens) phloem, following infestation with the generalist aphid Myzus persicae”

✓ located verbatim in the source · abstract, characters 119–364

Title

Involvement of the xyloglucan endotransglycosylase/hydrolases encoded by celery XTH1 and Arabidopsis XTH33 in the phloem response to aphids

FANCHON DIVOL; FRANÇOISE VILAINE; SANDRA THIBIVILLIERS; et al. Plant Cell & Environment 2007. doi:10.1111/j.1365-3040.2006.01618.x

Other claims from this paper (5)
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

One AQUA is a candidate explanation for ethylene-induced expansion.

Taxon
grapet0
Gene
AQUAe0
Outcome
ethylene-induced berry expansione0

Verbatim

e0

“One XTH and one AQUA seem to be good candidates to explain the ethylene-induced berry expansion.”

✓ located verbatim in the source · abstract, characters 1424–1520
t0

“grape”

✓ located verbatim in the source · title, characters 19–24

Title

Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase

Christian Chervin; Arak Tira‐umphon; Nancy Terrier; et al. Physiologia Plantarum 2008. doi:10.1111/j.1399-3054.2008.01158.x

Other claims from this paper (7)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Berry expansion was related to expression changes in cell wall structure genes.

Taxon
grapet0
Gene
'cell wall structure' genese0
Outcome
berry expansiont0
Qualifier
polygalacturonases, xyloglucan endotransglucosylases (XTH), pectin methyl esterases, cellulose synthases and expansinse0

Not reportedDirection

Verbatim

e0

“This was related to changes in the expression pattern of many genes, classified in two groups: (1) 'water exchange' genes: various aquaporins (AQUA) and (2) 'cell wall structure' genes: polygalacturonases, xyloglucan endotransglucosylases (XTH), pectin methyl esterases, cellulose synthases and expansins.”

✓ located verbatim in the source · abstract, characters 844–1149
t0

“grape berry expansion”

✓ located verbatim in the source · title, characters 19–40

Title

Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase

Christian Chervin; Arak Tira‐umphon; Nancy Terrier; et al. Physiologia Plantarum 2008. doi:10.1111/j.1399-3054.2008.01158.x

Other claims from this paper (7)

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