Search claims · PlantClaims

Associationobservedoriginal resultmeasured

Claim · model-written summary

Phylogenetic groups overlapped with biological function.

Gene: phylogenetic groupse0
Outcome: biological functione0

Not reportedTaxonTreatmentComparatorDirection

Verbatim

e0
“phylogenetic groups detected also overlap with the biological function”
✓ located verbatim in the source · abstract, characters 1388–1458

Title

Bioinformatics Analysis of Phylogeny and Transcription of TAA/YUC Auxin Biosynthetic Genes

Axel Poulet; Verena Kriechbaumer International Journal of Molecular Sciences 2017. doi:10.3390/ijms18081791

Other claims from this paper (3)

Observation ER membrane localization of TAA/YUC proteins was present early in moss and club moss evolution.
Observation ER membrane anchored YUC proteins were mainly found in roots.
Observation Cytosolic proteins were more abundant in the shoot.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The 575 sequences with predicted function involve biological process, cellular component and molecular function.

Taxon: 水稻e0
Outcome: 涉及了生物过程、细胞成份和分子功能这3个方面e5
Value: 575条序列e5

Verbatim

e0
“对双胚苗水稻SARⅡ-628品系中的单倍体及其对应二倍体的RNA水平的表达变化情况进行对比分析”
✓ located verbatim in the source · abstract, characters 13–60

e5
“对单倍化中已经预测功能的575条序列进行功能分类, 发现都涉及了生物过程、细胞成份和分子功能这3个方面”
✓ located verbatim in the source · abstract, characters 194–245

Title

双胚苗水稻中单倍体与二倍体基因表达芯片分析

Science in China Series C-Life Sciences (in Chinese) 2008. doi:10.1360/zc2008-38-7-654

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The authors found no obvious biological function for palm leaf sclereids.

Taxon: palme0
Outcome: biological functione0
Direction: no obviouse0

Verbatim

e0
“Sclereids in palm leaves have no obvious biological function.”
✓ located verbatim in the source · abstract, characters 457–518

Title

STRUCTURE AND DISTRIBUTION OF SCLEREIDS IN THE LEAVES OF PALMS

P. B. TOMLINSON New Phytologist 1959. doi:10.1111/j.1469-8137.1959.tb05355.x

Other claims from this paper (6)

Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

The nonlinear function coefficients have biological meaning.

Taxon: winter wheatTriticum aestivumt0
Outcome: coefficients with biological meaninge0

Not reportedComparatorValue

Verbatim

e0
“The nonlinear vernalization function developed in this study has coefficients with biological meaning.”
✓ located verbatim in the source · abstract, characters 670–772

t0
“Winter Wheat”
✓ located verbatim in the source · title, characters 50–62

Title

A Generalized Vernalization Response Function for Winter Wheat

Nereu Augusto Streck; Albert Weiss; P. Stephen Baenziger Agronomy Journal 2003. doi:10.2134/agronj2003.1550a

Other claims from this paper (3)

Method / resource The generalized nonlinear function fit developmental response better, with RMSE 0.032 versus 0.060 and 0.129 for the linear functions.
Method / resource A general function can describe winter wheat vernalization response.
Method / resource The general function may reduce input data requirements for wheat simulation models.

Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Different WB1 mutations disrupted its biological function.

Taxon: riceOryza sativat0
Gene: WB1e0
Outcome: biological functione0
Direction: disrupte0

Verbatim

e0
“different mutations of WB1 disrupt its biological function”
✓ located verbatim in the source · abstract, characters 1416–1474

t0
“Rice”
✓ located verbatim in the source · title, characters 45–49

Title

WB1, a Regulator of Endosperm Development in Rice, Is Identified by a Modified MutMap Method

Hong Wang; Yingxin Zhang; Lianping Sun; et al. International Journal of Molecular Sciences 2018. doi:10.3390/ijms19082159

Other claims from this paper (14)

Observation The wb1 mutant develops white-belly endosperm and abnormal inner starch granules.
Observation The wb1 mutant had a higher grain chalkiness rate and degree than wild type.
Observation The wb1 mutant had a roughly 34% lower 1000-grain weight than wild type.
Observation Amylose content significantly decreased in wb1.
Observation Amylopectin content significantly decreased in wb1.
Observation Physical properties of starch in wb1 were altered.
Method / resource Modified MutMap identified 2.52 Mb of candidate regions.
Observation The candidate regions contained 275 SNPs on chromosome 4.
Observation The study identified 19 SNPs at 12 candidate genes.
Observation The study identified 12 candidate genes bearing 19 SNPs.
Association Candidate-gene transcript analysis implicated WB1, encoding a cell-wall invertase, as the probable cause.
Intervention effect CRISPR/cas9 disruption in Nipponbare demonstrated that WB1 regulates endosperm development.
Mechanism The authors infer that a WB1 mutation controls the wb1 phenotype.
Method / resource The authors conclude modified MutMap is feasible for identifying mutant genes and could advance rice genetic improvement.

Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

OsWRKY78 phosphorylation was necessary for its biological function.

Taxon: riceOryza sativat0
Gene: OsWRKY78e0
Outcome: biological functione0
Qualifier: this phosphorylatione0

Verbatim

e0
“this phosphorylation can enhance OsWRKY78 stability and is necessary for its biological function”
✓ located verbatim in the source · abstract, characters 759–855

t0
“in rice”
✓ located verbatim in the source · title, characters 71–78

Title

OsWRKY78 regulates panicle exsertion via gibberellin signaling pathway in rice

Enyang Mei; Mingliang He; Min Xu; et al. Journal of Integrative Plant Biology 2024. doi:10.1111/jipb.13636

Other claims from this paper (6)

Observation The oswrky78 mutant showed severe panicle enclosure.
Mechanism Reduced bioactive GA content caused the mutant defect.
Mechanism OsWRKY78 directly activated GA biosynthesis.
Mechanism OsWRKY78 indirectly suppressed GA metabolism.
Observation OsWRKY78 interacted with OsMAPK6.
Mechanism OsMAPK6 phosphorylated OsWRKY78, increasing its stability.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The identified compounds were classified into 43 biological function categories.

Taxon: Manila tamarinde0
Outcome: classified into 43 biological function categoriese1
Value: 43 biological function categoriese1

Verbatim

e0
“Manila tamarind is an underutilized and multipurpose crop”
✓ located verbatim in the source · abstract, characters 14–71

e1
“which were classified into 43 biological function categories”
✓ located verbatim in the source · abstract, characters 1555–1615

Title

Nutritional valorization of Manila tamarind accessions through antioxidant analysis and UHPLC-Q-TOF-MS-based metabolomic profiling

Ashok Yadav; Suchisree Jha; Girija Choudhary; et al. Frontiers in Nutrition 2025. doi:10.3389/fnut.2025.1646522

Other claims from this paper (16)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Annotated sequences had cellular component, biological process and molecular function assignments.

Taxon: peppert0
Outcome: cellular component,biological process and molecular functione0

Verbatim

e0
“297,271 and 316 EST sequences having function in cellular component,biological process and molecular function,respectively.”
✓ located verbatim in the source · abstract, characters 502–625

t0
“pepper”
✓ located verbatim in the source · title, characters 83–89

Title

Distribution characterization and application of SSR-containing ESTs (EST-SSRs) in pepper.

Zhi Li; Shubin Wang; Diao WeiPing; et al. Jiangsu nongye xuebao 2010

Other claims from this paper (9)

Method / resource The pepper sequences contained 1 658 EST-SSRs.
Observation Dinucleotide repeats were the most abundant at 56.4%, followed by other repeat classes.
Observation GA/TC was the leading specific repeat type at 23.33%.
Method / resource The authors designed 810 primer pairs from EST-SSRs.
Method / resource Eighty primer pairs amplified effectively.
Method / resource Forty-six primer pairs exhibited polymorphism.
Observation The polymorphic primers averaged 1.9 alleles.
Observation Seventeen pepper cultivars grouped into six clusters at similarity 0.718.
Association Genetic correlation among cultivars was related to origin.

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Residues essential for glycosyltransferase function in homologous proteins are not essential for the biological function of IRX9/IRX9L.

Taxon: ArabidopsisArabidopsist0
Gene: IRX9/IRX9Le0
Outcome: biological functione0

Verbatim

e0
“residues known to be essential for glycosyltransferases function in homologous proteins are not essential for the biological function of IRX9/IRX9L”
✓ located verbatim in the source · abstract, characters 1193–1340

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 158–169

Title

Site-Directed Mutagenesis of IRX9, IRX9L and IRX14 Proteins Involved in Xylan Biosynthesis: Glycosyltransferase Activity Is Not Required for IRX9 Function in Arabidopsis

Yanfang Ren; Sara Fasmer Hansen; Berit Ebert; et al. PLoS ONE 2014. doi:10.1371/journal.pone.0105014

Other claims from this paper (6)

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors interpret AtPCaP1 biological function as strictly related to the presence of multiple ligands.

Taxon: ArabidopsisArabidopsise0
Gene: AtPCaP1e1
Outcome: biological functione1

Verbatim

e0
“Arabidopsis PCaP1 (AtPCaP1)”
✓ located verbatim in the source · abstract, characters 614–641

e1
“AtPCaP1 biological function is strictly related to the presence of multiple ligands”
✓ located verbatim in the source · abstract, characters 1483–1566

Title

Role of myristoylation in modulating PCaP1 interaction with calmodulin

Marco Pedretti; Filippo Favretto; Francesca Troilo; et al. Plant Physiology and Biochemistry 2023. doi:10.1016/j.plaphy.2023.108003

Other claims from this paper (6)

“biological function”

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