By interacting organism › Bacteria › Cytophagaceae

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Mulch enriched Flavobacteria and Cytophaga sequence variants in apple orchard soil.

Taxon: appleMalus domesticat0
Treatment: mulch applicatione0
Interactor: Flavobacteriae0symbiont
Second interactor: CytophagaCytophagae0symbiont
Outcome: Sequence variants belonging to Flavobacteria and Cytophagae0
Direction: enrichede0

Not reportedComparator

Verbatim

e0
“Sequence variants belonging to Flavobacteria and Cytophaga were enriched by the mulch application”
✓ located verbatim in the source · abstract, characters 937–1034

t0
“apple”
✓ located after whitespace/quote normalisation · title, characters 134–139

Title

Root-Zone Microbiome Responds to Organic Mulch Cover by Reducing Fungal Pathogen Load and Boosting Tree Establishment in High-Density Apple Orchards

Hazem Sharaf; Mark Williams; Gregory Peck Agronomy 2026. doi:10.3390/agronomy16070762

Other claims from this paper (6)

Intervention effect Mulch had the strongest effect on bacterial and fungal groups in apple orchards.
Association Mulch was associated with increased soil organic matter and carbon cycling in apple orchards.
Intervention effect Mulch suppressed the relative abundance of potential soil-borne plant fungal pathogens in every orchard and year.
Intervention effect Mulch enriched arbuscular mycorrhizal fungi in apple orchards.
Association Mulch-associated microbial shifts accompanied a 33.5% increase in apple trunk cross-sectional area by year three.
Intervention effect Fertilizer treatments had weaker effects on apple orchard microbial communities.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Cytophaga was correlated with lettuce yield and quality in a random forest model.

Taxon: lettuceLactuca sativat0
Interactor: CytophagaCytophagae0other
Outcome: yield and qualitye0
Value: R 2 = 0.595–0.938e0

Not reportedDirection

Verbatim

e0
“Flavihumibacter, Runella , and Cytophaga as key taxa correlated with yield and quality (R 2 = 0.595–0.938)”
✓ located verbatim in the source · abstract, characters 1265–1371

t0
“lettuce”
✓ located verbatim in the source · title, characters 61–68

Title

Ozone treatment enhances yield and quality of soilless-grown lettuce by modulating bacterial communities in the nutrient solution

Qingqing Zhao; Xinguo Zhou; Junjie Feng; et al. Scientia Horticulturae 2026. doi:10.1016/j.scienta.2026.114783

Other claims from this paper (11)

Intervention effect Low ozone concentrations significantly improved lettuce yield, quality and water-fertilizer use efficiency.
Intervention effect Ozone at 4 mg L –1 had inhibitory effects.
Intervention effect Ozone reduced bacterial richness and diversity, most strongly at mid-growth.
Observation Proteobacteria dominated nutrient-solution microbial communities.
Association Pseudomonas abundance decreased as ozone concentration increased.
Observation Functional predictions suggested shifts in chemoheterotrophic groups.
Observation Functional predictions suggested shifts in nitrogen-cycling-related taxa.
Association Flavihumibacter was correlated with lettuce yield and quality in a random forest model.
Association Runella was correlated with lettuce yield and quality in a random forest model.
Mechanism Path modeling suggested ozone-driven microbial restructuring influenced lettuce growth variation.
Recommendation The authors recommend optimizing ozone management in recirculating nutrient solutions.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Hazelnuts from all major commercial growing locations contained Spirosoma pollinicola proteins.

Taxon: HazelnutsCoryluse0
Interactor: Spirosoma pollinicolaSpirosoma pollinicolae0symbiont
Outcome: Spirosoma pollinicola sp. proteinse0
Setting: all of the major commercial growing locations worldwidee0

Verbatim

e0
“Hazelnuts from all of the major commercial growing locations worldwide contained Spirosoma pollinicola sp. proteins”
✓ located verbatim in the source · abstract, characters 268–383

Title

Seed‐Borne Spirosoma pollinicola in Commercial Hazelnuts: A Global Survey of Microbial Presence and Allergen Diversity

Barbara Karpinska; Alessandro Fiocchi; Marta Biolatti; et al. Plant Cell & Environment 2025. doi:10.1111/pce.70225

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Spirosoma contamination could not be removed from hazelnuts.

Taxon: HazelnutsCorylust0
Interactor: S. pollinicolaSpirosoma pollinicolae1symbiont
Outcome: remove the contaminatione1

Verbatim

t0
“Commercial Hazelnuts”
✓ located verbatim in the source · title, characters 36–56

e1
“We were unable to remove the contamination by S. pollinicola proteins, showing that this bacterium is a seed endosymbiont”
✓ located verbatim in the source · abstract, characters 471–592

Title

Seed‐Borne Spirosoma pollinicola in Commercial Hazelnuts: A Global Survey of Microbial Presence and Allergen Diversity

Barbara Karpinska; Alessandro Fiocchi; Marta Biolatti; et al. Plant Cell & Environment 2025. doi:10.1111/pce.70225

Other claims from this paper (7)

Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

S. pollinicola is a seed endosymbiont.

Taxon: HazelnutsCorylust0
Interactor: S. pollinicolaSpirosoma pollinicolae1symbiont
Outcome: seed endosymbionte1

Verbatim

t0
“Commercial Hazelnuts”
✓ located verbatim in the source · title, characters 36–56

e1
“We were unable to remove the contamination by S. pollinicola proteins, showing that this bacterium is a seed endosymbiont”
✓ located verbatim in the source · abstract, characters 471–592

Title

Seed‐Borne Spirosoma pollinicola in Commercial Hazelnuts: A Global Survey of Microbial Presence and Allergen Diversity

Barbara Karpinska; Alessandro Fiocchi; Marta Biolatti; et al. Plant Cell & Environment 2025. doi:10.1111/pce.70225

Other claims from this paper (7)

Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Spirosoma protein persistence may influence hazelnut allergenicity.

Taxon: HazelnutsCorylust0
Interactor: SpirosomaSpirosomae5symbiont
Outcome: hazelnut allergenicitye5
Qualifier: Spirosoma protein persistence may influencee5

Verbatim

t0
“Commercial Hazelnuts”
✓ located verbatim in the source · title, characters 36–56

e5
“Spirosoma protein persistence may influence hazelnut allergenicity”
✓ located verbatim in the source · abstract, characters 959–1025

Title

Seed‐Borne Spirosoma pollinicola in Commercial Hazelnuts: A Global Survey of Microbial Presence and Allergen Diversity

Barbara Karpinska; Alessandro Fiocchi; Marta Biolatti; et al. Plant Cell & Environment 2025. doi:10.1111/pce.70225

Other claims from this paper (7)

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Spirosoma abundance increased as Ginkgo seedlings grew.

Taxon: G. bilobaGinkgo bilobae0
Organ / stage: seedlingse0
Interactor: SpirosomaSpirosomae0symbiont
Outcome: abundance of potentially beneficial microbese0
Direction: increasede0

Verbatim

e0
“the growth of two-year-old G. biloba seedlings resulted in the maturation of phyllosphere microbiome, indicating by the gradually increased microbial alpha diversity and the increased abundance of potentially beneficial microbes, including Bacillus and Spirosoma species.”
✓ located verbatim in the source · abstract, characters 507–778

Title

Phyllosphere microbial transplantation mitigates heat-induced leaf chlorosis in Ginkgo biloba seedlings

Qiutong Xu; Jianghong Yi; Yadong Wu; et al. Plant Stress 2025. doi:10.1016/j.stress.2025.101148

Other claims from this paper (14)

Association As seedlings grew, phyllosphere microbial alpha diversity increased.
Association Bacillus abundance increased as Ginkgo seedlings grew.
Intervention effect Heat reduced phyllosphere Bacillus abundance.
Intervention effect Heat reduced phyllosphere Spirosoma abundance.
Intervention effect Heat enriched phyllosphere Microbacterium.
Intervention effect Heat enriched phyllosphere Chryseobacterium.
Intervention effect Heat stress caused leaf chlorosis.
Intervention effect Heat stress reduced leaf soluble sugar content.
Intervention effect Heat stress changed catalase, superoxide dismutase and peroxidase levels.
Intervention effect Two-fold microbiota inoculation restored Bacillus abundance.
Intervention effect Two-fold microbiota inoculation reduced catalase activity.
Intervention effect Two-fold microbiota inoculation reduced peroxidase activity.
Intervention effect Two-fold microbiota inoculation increased superoxide dismutase levels.
Intervention effect Two-fold microbiota inoculation attenuated leaf chlorosis.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Heat reduced phyllosphere Spirosoma abundance.

Taxon: Ginkgo bilobaGinkgo bilobat0
Treatment: 40/30 °C (day/night) heat regime for two weekse0
Interactor: SpirosomaSpirosomae0symbiont
Outcome: abundance of Bacillus and Spirosomae0
Direction: reducede0

Not reportedComparator

Verbatim

e0
“40/30 °C (day/night) heat regime for two weeks led to drastic compositional shifts, including reduced abundance of Bacillus and Spirosoma , and enrichment of Microbacterium and Chryseobacterium .”
✓ located verbatim in the source · abstract, characters 788–983

t0
“Ginkgo biloba”
✓ located verbatim in the source · title, characters 80–93

Title

Phyllosphere microbial transplantation mitigates heat-induced leaf chlorosis in Ginkgo biloba seedlings

Qiutong Xu; Jianghong Yi; Yadong Wu; et al. Plant Stress 2025. doi:10.1016/j.stress.2025.101148

Other claims from this paper (14)

Association As seedlings grew, phyllosphere microbial alpha diversity increased.
Association Bacillus abundance increased as Ginkgo seedlings grew.
Association Spirosoma abundance increased as Ginkgo seedlings grew.
Intervention effect Heat reduced phyllosphere Bacillus abundance.
Intervention effect Heat enriched phyllosphere Microbacterium.
Intervention effect Heat enriched phyllosphere Chryseobacterium.
Intervention effect Heat stress caused leaf chlorosis.
Intervention effect Heat stress reduced leaf soluble sugar content.
Intervention effect Heat stress changed catalase, superoxide dismutase and peroxidase levels.
Intervention effect Two-fold microbiota inoculation restored Bacillus abundance.
Intervention effect Two-fold microbiota inoculation reduced catalase activity.
Intervention effect Two-fold microbiota inoculation reduced peroxidase activity.
Intervention effect Two-fold microbiota inoculation increased superoxide dismutase levels.
Intervention effect Two-fold microbiota inoculation attenuated leaf chlorosis.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Corn uniquely promoted abundances of Pseudomonas and Sporocytophaga regardless of disrupted soil.

Taxon: cornZea mays subsp. mayse3
Interactor: PseudomonasPseudomonase3symbiont
Second interactor: SporocytophagaSporocytophagae3symbiont
Outcome: abundances of Pseudomonas and Sporocytophagae3
Direction: promotede3
Setting: disrupted soile3

Verbatim

e3
“corn uniquely promoted abundances of Pseudomonas and Sporocytophaga, regardless of the disrupted soil in which it was grown”
✓ located verbatim in the source · abstract, characters 971–1094

Title

Soil microbiome disruption reveals specific and general plant-bacterial relationships in three agroecosystem soils

Michael J. DiLegge; Daniel K. Manter; Jorge M. Vivanco PLoS ONE 2022. doi:10.1371/journal.pone.0277529

Other claims from this paper (5)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Organic fertilizer increased soil Cytophagaceae abundance.

Taxon: grape (V. vinifera)e1
Treatment: organice0
Interactor: CytophagaceaeCytophagaceaee0symbiont
Outcome: abundancee0
Direction: increasede0
Comparator: Blank controle2

Verbatim

e0
“Micrococcaceae, Cytophagaceae and Streptomycetaceae abundance was increased by inorganic, organic and combined fertilizers, respectively”
✓ located verbatim in the source · abstract, characters 986–1122

e1
“grape (V. vinifera) quality”
✓ located verbatim in the source · abstract, characters 29–56

e2
“Blank control”
✓ located verbatim in the source · abstract, characters 367–380

Title

Influence of Fertilizers and Soil Conditionerson Soil Bacterial Diversity and the Quality of WineGrape (Cabernet Sauvignon)

Rui Wang; Quan Sun; Lidong Ji; et al. Polish Journal of Environmental Studies 2021. doi:10.15244/pjoes/132312

Other claims from this paper (14)

Intervention effect Organic and combined fertilizers increased soil organic matter.
Intervention effect All schedules increased soil available N, P, K and total N.
Intervention effect Inorganic fertilizers increased grape tannin content.
Intervention effect Organic fertilizers increased grape total phenols.
Intervention effect Organic fertilizers decreased grape tannin.
Intervention effect Combined fertilizers decreased grape soluble solids.
Intervention effect Soil conditioners increased grape tannin.
Intervention effect Soil conditioners decreased grape soluble solids, phenols and titratable acids.
Intervention effect Soil conditioners decreased grape sugar-acidity ratio.
Intervention effect Inorganic fertilizer increased soil Micrococcaceae abundance.
Intervention effect Combined fertilizer increased soil Streptomycetaceae abundance.
Intervention effect Soil conditioners reduced several bacterial families relative to inorganic fertilizer.
Association Soil available N and P and grape anthocyanins correlated with five bacterial genera.
Mechanism Authors attributed improved soil fertility and berry quality to changed soil bacteria.

Cytophagaceae 16 claims

16 claims