By organism › Green plants › Amphorogynaceae

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Four chloroplast genomes ranged from 119,941 to 138,492 bp.

Taxon: Taxillus and PhacellariaTaxillusPhacellariat0
Outcome: chloroplast genomese0
Value: 119,941–138,492 bpe0

Verbatim

e0
“The chloroplast genomes of the four species were 119,941–138,492 bp in length”
✓ located verbatim in the source · abstract, characters 459–536

t0
“Taxillus and Phacellaria”
✓ located verbatim in the source · title, characters 55–79

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The trnV-UAC gene was lost in P. rigidula.

Taxon: P. rigidulaPhacellaria rigidulae0
Gene: trnV-UAC genee0
Outcome: trnV-UAC genee0
Direction: loste0

Verbatim

e0
“in P. rigidula, the trnV-UAC gene and the ycf15 gene were lost”
✓ located verbatim in the source · abstract, characters 759–821

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The ycf15 gene was lost in P. rigidula.

Taxon: P. rigidulaPhacellaria rigidulae0
Gene: ycf15 genee0
Outcome: ycf15 genee0
Direction: loste0

Verbatim

e0
“in P. rigidula, the trnV-UAC gene and the ycf15 gene were lost”
✓ located verbatim in the source · abstract, characters 759–821

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Only ndhB remained among ndh genes in P. rigidula.

Taxon: PhacellariaPhacellariat0
Gene: ndhBe0
Outcome: one ndh gene (ndhB) existede0

Verbatim

e0
“only one ndh gene (ndhB) existed”
✓ located verbatim in the source · abstract, characters 827–859

t0
“Phacellaria”
✓ located verbatim in the source · title, characters 68–79

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Associationobservedoriginal resultmeasured

Claim · model-written summary

P. rigidula and host T. chinensis had low chloroplast-genome homology.

Taxon: P. rigidulaPhacellaria rigidulae0
Interactor: T. chinensisTaxillus chinensise0host
Outcome: homologye0
Direction: lowe0

Verbatim

e0
“the homology between P. rigidula and its host T. chinensis was low”
✓ located verbatim in the source · abstract, characters 906–972

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

No horizontal gene transfer was found between P. rigidula and host T. chinensis.

Taxon: P. rigidulaPhacellaria rigidulae0
Interactor: T. chinensisTaxillus chinensise0host
Outcome: horizontal gene transfer was not founde0

Verbatim

e0
“horizontal gene transfer was not found between P. rigidula and its host T. chinensis”
✓ located verbatim in the source · abstract, characters 1092–1176

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Candidate variable chloroplast regions were selected for species identification.

Taxon: Taxillus and PhacellariaTaxillusPhacellariae0
Outcome: candidate highly variable regionse0
Value: Severale0

Verbatim

e0
“Several candidate highly variable regions in the chloroplast genomes of Taxillus and Phacellaria species were selected for species identification study”
✓ located verbatim in the source · abstract, characters 1178–1329

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Phacellaria had a close phylogenetic relationship with Viscum.

Taxon: PhacellariaPhacellariae0
Interactor: ViscumViscume0other
Outcome: close relationshipe0

Verbatim

e0
“species in Phacellaria had a close relationship with that in Viscum”
✓ located verbatim in the source · abstract, characters 1505–1572

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Amphorogynaceae and Viscaceae inflorescences are not dichasial and are difficult to compare with standard inflorescences.

Taxon: Amphorogynaceae and ViscaceaeAmphorogynaceae Viscaceaee0
Outcome: not dichasiale0
Qualifier: difficult to compare to "standard" inflorescencese0

Not reportedDirection

Verbatim

e0
“Inflorescences in Amphorogynaceae and Viscaceae are not dichasial and in general are difficult to compare to "standard" inflorescences”
✓ located verbatim in the source · abstract, characters 1724–1858

Title

Inflorescence evolution in Santalales: integrating morphological characters and molecular phylogenetics

Daniel L. Nickrent; Frank Anderson; Job Kuijt American Journal of Botany 2019. doi:10.1002/ajb2.1250

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Henslowia frutescens was identified as a mistletoe on green space plants.

Taxon: Henslowia frutescensDendrotrophe frutescense0
Outcome: Henslowia frutescense0

Verbatim

e0
“Henslowia frutescens.Champ”
✓ located verbatim in the source · abstract, characters 1080–1106

Title

POLA DISTRIBUSI DAN IDENTIFIKASI JENIS BENALU PADA TUMBUHAN RUANG TERBUKA HIJAU KOTA SURABAYA

Dwi Haryanta; Achmadi Susilo Journal of Research and Technology 2018. doi:10.55732/jrt.v4i2.157

Other claims from this paper (3)

Amphorogynaceae 68 claims

68 claims