By organism › Green plants › Solanaceae › Solanum etuberosum

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

An additional genome of non-tuberizing S. etuberosum was included.

Taxon: S. etuberosumSolanum etuberosume0
Outcome: additional genomee0

Not reportedComparatorValue

Verbatim

e0
“an additional genome from non-tuberizing S. etuberosum”
✓ located verbatim in the source · abstract, characters 727–781

Title

The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids

S. R. Achakkagari; I. Bozan; J. C. Camargo-Tavares; et al. Scientific Data 2024. doi:10.1038/s41597-024-03300-5

Other claims from this paper (5)

Method / resource A phased genome assembly was provided for diploid S. okadae.
Method / resource Short reads and de novo assemblies were provided for 16 wild diploid Petota species.
Method / resource Genome sequence data were included for three polyploid potato hybrids.
Method / resource High quality short read assemblies ranged from 575 to 795 Mbp.
Method / resource Assemblies were annotated using transcriptome sequence data.

Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Leaf-expressed SP6A was dispensable for StSP3D long-range activity in Solanum etuberosum.

Taxon: Solanum etuberosumSolanum etuberosume0
Material: natural SP6A null mutante0
Gene: leaf-expressed SP6Ae0
Outcome: StSP3D long-range activitye0
Qualifier: dispensablee0

Not reportedDirection

Verbatim

e0
“non-tuber-bearing wild species Solanum etuberosum, a natural SP6A null mutant, we show that leaf-expressed SP6A is dispensable for StSP3D long-range activity”
✓ located verbatim in the source · abstract, characters 1076–1233

Title

Long-distance control of potato storage organ formation by SELF PRUNING 3D and FLOWERING LOCUS T-like 1

Shenglin Jing; Peng Jiang; Xiaomeng Sun; et al. Plant Communications 2023. doi:10.1016/j.xplc.2023.100547

Other claims from this paper (11)

Observation Short days activated StSP3D in potato.
Observation Short days activated StFTL1 in potato.
Intervention effect Overexpression of StSP3D promoted potato tuber formation under non-inductive long days.
Intervention effect Overexpression of StFTL1 promoted potato tuber formation under non-inductive long days.
Observation StSP3D tuber-inducing activity was graft transmissible in potato.
Observation StFTL1 tuber-inducing activity was graft transmissible in potato.
Mechanism StSP3D mediated secondary activation of StSP6A in potato stolon tips.
Mechanism StFTL1 mediated secondary activation of StSP6A in potato stolon tips.
Observation StSP3D bound the same protein partners as StSP6A in potato.
Observation StFTL1 bound the same protein partners as StSP6A in potato.
Mechanism The shared protein partners suggest StSP3D and StFTL1 can form transcriptionally active complexes in potato.

Observationobservedreview summarypositivebasis n/a

Claim · model-written summary

Somatic hybrids were successfully produced using S. etuberosum.

Taxon: S. etuberosumSolanum etuberosume0
Outcome: somatic hybridse0

Verbatim

e0
“The somatic hybrids has been produced successfully by utilization of wild solanum species like S. etuberosum, S. cardiophyllam and S. pinnetisectum.”
✓ located verbatim in the source · abstract, characters 875–1023

Title

Potato: Breeding and Genomics

Satish K. Luthra; Vinod Kumar; Jagesh K. Tiwari Vegetable Science 2023. doi:10.61180/vegsci.2023.v50.spl.03

Other claims from this paper (5)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Solanum etuberosum had a repeat profile more similar to the potato clade.

Taxon: Solanum etuberosumSolanum etuberosume0
Outcome: repeat profilee0
Direction: more similare0
Comparator: potato cladee0

Verbatim

e0
“The repeat profile of Solanum etuberosum was more similar to that of the potato clade.”
✓ located verbatim in the source · abstract, characters 1402–1488

Title

Comparative analysis of repetitive sequences among species from the potato and the tomato clades

Paola Gaiero; Magdalena Vaio; Sander A Peters; et al. Annals of Botany 2018. doi:10.1093/aob/mcy186

Other claims from this paper (14)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Two reciprocal chromosomal translocations were found in Solanum etuberosum and S. caripense.

Taxon: Solanum etuberosumSolanum etuberosume4
Outcome: reciprocal chromosomal translocationse4
Value: twoe4

Verbatim

e4
“modifications to the FISH signal bar code led to the discovery of two reciprocal chromosomal translocations in Solanum etuberosum and S. caripense”
✓ located verbatim in the source · abstract, characters 1160–1306

Title

Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution

Guilherme T Braz; Li He; Hainan Zhao; et al. Genetics 2017. doi:10.1534/genetics.117.300344

Other claims from this paper (4)

Method / resource Oligo probes generated 26 distinct FISH signals in potato.
Method / resource The same barcode identified the 12 homeologous chromosomes among distantly related Solanum species.
Method / resource Accurate karyotypes based on individually identified chromosomes were established in six Solanum species.
Method / resource Oligo-based chromosome painting validated the translocations.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Oligo-based chromosome painting validated the translocations.

Taxon: Solanum etuberosumSolanum etuberosume4
Outcome: these translocationse5
Comparator: oligo-based chromosome paintinge5

Verbatim

e4
“modifications to the FISH signal bar code led to the discovery of two reciprocal chromosomal translocations in Solanum etuberosum and S. caripense”
✓ located verbatim in the source · abstract, characters 1160–1306

e5
“We also validated these translocations by oligo-based chromosome painting”
✓ located verbatim in the source · abstract, characters 1308–1381

Title

Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution

Guilherme T Braz; Li He; Hainan Zhao; et al. Genetics 2017. doi:10.1534/genetics.117.300344

Other claims from this paper (4)

Method / resource Oligo probes generated 26 distinct FISH signals in potato.
Method / resource The same barcode identified the 12 homeologous chromosomes among distantly related Solanum species.
Method / resource Accurate karyotypes based on individually identified chromosomes were established in six Solanum species.
Observation Two reciprocal chromosomal translocations were found in Solanum etuberosum and S. caripense.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The initial Illumina assembly of Solanum etuberosum had an N50 statistic of 1.7 Mb.

Taxon: Solanum etuberosumSolanum etuberosume0
Outcome: N50 statistice1
Value: 1.7Mbe1

Verbatim

e0
“Solanum etuberosum, a non-tuber-bearing species from Chile”
✓ located verbatim in the source · abstract, characters 180–238

e1
“The initial Illumina assembly consisted of 3666 scaffolds with the N50 statistic of 1.7Mb and captured 94% of the predicted 702 Mb genome size”
✓ located verbatim in the source · abstract, characters 498–640

Title

You say tomato, I say potato: high-quality genome assembly of the sister-group species Solanum etuberosum provides insights into genome and trait evolution

Lidija Berke; Laurie Grandont; Saulo Aflitos; et al. Socio-Environmental Systems Modeling 2016

Other claims from this paper (7)

Method / resource The initial Illumina assembly of Solanum etuberosum consisted of 3666 scaffolds.
Method / resource The initial Illumina assembly captured 94% of the predicted 702 Mb genome size.
Method / resource Scaffolding with BioNano genome mapping gave a final assembly with an N50 of 5 Mb or more.
Method / resource The S. etuberosum genome assembly is one of the most contiguous Solanum genome assemblies.
Method / resource The S. etuberosum genome assembly covers 97% of the expected gene space.
Method / resource The S. etuberosum genome assembly is also one of the most complete Solanum genome assemblies.
Observation Evolution of genes related to tuber formation, pathogen resistance, flower color and glycoalkaloid biosynthesis was reconstructed from the annotated S. etuberosum genome.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The initial Illumina assembly of Solanum etuberosum consisted of 3666 scaffolds.

Taxon: Solanum etuberosumSolanum etuberosume0
Outcome: scaffoldse1
Value: 3666 scaffoldse1

Verbatim

e0
“Solanum etuberosum, a non-tuber-bearing species from Chile”
✓ located verbatim in the source · abstract, characters 180–238

e1
“The initial Illumina assembly consisted of 3666 scaffolds with the N50 statistic of 1.7Mb and captured 94% of the predicted 702 Mb genome size”
✓ located verbatim in the source · abstract, characters 498–640

Title

You say tomato, I say potato: high-quality genome assembly of the sister-group species Solanum etuberosum provides insights into genome and trait evolution

Lidija Berke; Laurie Grandont; Saulo Aflitos; et al. Socio-Environmental Systems Modeling 2016

Other claims from this paper (7)

Method / resource The initial Illumina assembly of Solanum etuberosum had an N50 statistic of 1.7 Mb.
Method / resource The initial Illumina assembly captured 94% of the predicted 702 Mb genome size.
Method / resource Scaffolding with BioNano genome mapping gave a final assembly with an N50 of 5 Mb or more.
Method / resource The S. etuberosum genome assembly is one of the most contiguous Solanum genome assemblies.
Method / resource The S. etuberosum genome assembly covers 97% of the expected gene space.
Method / resource The S. etuberosum genome assembly is also one of the most complete Solanum genome assemblies.
Observation Evolution of genes related to tuber formation, pathogen resistance, flower color and glycoalkaloid biosynthesis was reconstructed from the annotated S. etuberosum genome.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The initial Illumina assembly captured 94% of the predicted 702 Mb genome size.

Taxon: Solanum etuberosumSolanum etuberosume0
Outcome: capturede1
Value: 94%e1
Comparator: the predicted 702 Mb genome sizee1

Verbatim

e0
“Solanum etuberosum, a non-tuber-bearing species from Chile”
✓ located verbatim in the source · abstract, characters 180–238

e1
“The initial Illumina assembly consisted of 3666 scaffolds with the N50 statistic of 1.7Mb and captured 94% of the predicted 702 Mb genome size”
✓ located verbatim in the source · abstract, characters 498–640

Title

You say tomato, I say potato: high-quality genome assembly of the sister-group species Solanum etuberosum provides insights into genome and trait evolution

Lidija Berke; Laurie Grandont; Saulo Aflitos; et al. Socio-Environmental Systems Modeling 2016

Other claims from this paper (7)

Method / resource The initial Illumina assembly of Solanum etuberosum had an N50 statistic of 1.7 Mb.
Method / resource The initial Illumina assembly of Solanum etuberosum consisted of 3666 scaffolds.
Method / resource Scaffolding with BioNano genome mapping gave a final assembly with an N50 of 5 Mb or more.
Method / resource The S. etuberosum genome assembly is one of the most contiguous Solanum genome assemblies.
Method / resource The S. etuberosum genome assembly covers 97% of the expected gene space.
Method / resource The S. etuberosum genome assembly is also one of the most complete Solanum genome assemblies.
Observation Evolution of genes related to tuber formation, pathogen resistance, flower color and glycoalkaloid biosynthesis was reconstructed from the annotated S. etuberosum genome.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Scaffolding with BioNano genome mapping gave a final assembly with an N50 of 5 Mb or more.

Taxon: Solanum etuberosumSolanum etuberosume0
Treatment: BioNano genome mappinge2
Outcome: N50e2
Value: 5Mbe2

Verbatim

e0
“Solanum etuberosum, a non-tuber-bearing species from Chile”
✓ located verbatim in the source · abstract, characters 180–238

e2
“The assembly was further scaffolded usingBioNano genome mapping, yielding a final genome assembly that surpassed an N50 of 5Mb”
✓ located verbatim in the source · abstract, characters 642–768

Title

You say tomato, I say potato: high-quality genome assembly of the sister-group species Solanum etuberosum provides insights into genome and trait evolution

Lidija Berke; Laurie Grandont; Saulo Aflitos; et al. Socio-Environmental Systems Modeling 2016

Other claims from this paper (7)

Method / resource The initial Illumina assembly of Solanum etuberosum had an N50 statistic of 1.7 Mb.
Method / resource The initial Illumina assembly of Solanum etuberosum consisted of 3666 scaffolds.
Method / resource The initial Illumina assembly captured 94% of the predicted 702 Mb genome size.
Method / resource The S. etuberosum genome assembly is one of the most contiguous Solanum genome assemblies.
Method / resource The S. etuberosum genome assembly covers 97% of the expected gene space.
Method / resource The S. etuberosum genome assembly is also one of the most complete Solanum genome assemblies.
Observation Evolution of genes related to tuber formation, pathogen resistance, flower color and glycoalkaloid biosynthesis was reconstructed from the annotated S. etuberosum genome.

Solanum etuberosum 47 claims

47 claims