Paper · 1995 · Journal of Biological Chemistry

Molecular Characterization of a Putative Arabidopsis thaliana Copper Transporter and Its Yeast Homologue

Karlheinz Kampfenkel; Sergei Kushnir; Elena Babiychuk; et al.

11
claims
22
verbatim quotes
268
citations
3
research areas
✓
Open access · cc-by

Abstract

At the molecular level, little is known about the transport of copper across plant membranes. We have isolated an Arabidopsis thaliana cDNA by complementation of a mutant (ctr1-3) of Saccharomyces cerevisiae defective in high affinity copper uptake. This cDNA codes for a highly hydrophobic protein (COPT1) of 169 amino acid residues and with three putative transmembrane domains. Most noteworthy, the first 44 residues display significant homology to the methionine- and histidine-rich copper binding domain of three bacterial copper binding proteins, among these a copper transporting ATPase. Mutant yeast cells expressing COPT1 exhibit nearly wild type behavior with regard to growth on a nonfermentable carbon source and resistance to copper and iron starvation. Expression of COPT1 is also associated with an increased sensitivity to copper toxicity. Additionally, COPT1 shows significant homology to an open reading frame of 189 amino acid residues on yeast chromosome VIII. This gene (CTR2) may encode an additional yeast metal transporter able to mediate the uptake of copper. A mutation in CTR2 displays a higher level of resistance to toxic copper concentrations. Overexpression of CTR2 provides increased resistance to copper starvation and is also associated with an increased sensitivity to copper toxicity. The amino acid sequence of CTR2, like Arabidopsis COPT1, contains three potential transmembrane domains. Taken together, the data suggest that a plant metal transporter, which is most likely involved in the transport of copper, has been identified.

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Claims 11

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

An Arabidopsis thaliana cDNA complemented the copper uptake defect of yeast ctr1-3.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
ctr1-3e0
Outcome
complementatione0
Comparator
a mutant (ctr1-3) of Saccharomyces cerevisiaee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“We have isolated an Arabidopsis thaliana cDNA by complementation of a mutant (ctr1-3) of Saccharomyces cerevisiae defective in high affinity copper uptake.”

✓ located verbatim in the source · abstract, characters 94–249 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

COPT1 is a 169-residue hydrophobic protein with three putative transmembrane domains.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
COPT1e0
Outcome
highly hydrophobic proteine0
Value
169 amino acid residuese0
Qualifier
three putative transmembrane domainse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“This cDNA codes for a highly hydrophobic protein (COPT1) of 169 amino acid residues and with three putative transmembrane domains.”

✓ located verbatim in the source · abstract, characters 250–380 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

The first 44 residues of COPT1 have significant homology to copper binding domains of three bacterial proteins.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
Copper Transportert1
Outcome
significant homologye0
Qualifier
methionine- and histidine-rich copper binding domaine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the first 44 residues display significant homology to the methionine- and histidine-rich copper binding domain of three bacterial copper binding proteins”

✓ located verbatim in the source · abstract, characters 398–551 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
t1

“Copper Transporter”

✓ located verbatim in the source · title, characters 62–80 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Yeast cells expressing COPT1 had nearly wild-type growth on nonfermentable carbon and resistance to copper and iron starvation.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
expressing COPT1e0
Gene
COPT1e0
Outcome
growth on a nonfermentable carbon source and resistance to copper and iron starvatione0
Direction
nearly wild typee0
Comparator
wild typee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Mutant yeast cells expressing COPT1 exhibit nearly wild type behavior with regard to growth on a nonfermentable carbon source and resistance to copper and iron starvation.”

✓ located verbatim in the source · abstract, characters 595–766 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

COPT1 expression increased yeast sensitivity to copper toxicity.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
Expression of COPT1e0
Gene
COPT1e0
Outcome
sensitivity to copper toxicitye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Expression of COPT1 is also associated with an increased sensitivity to copper toxicity.”

✓ located verbatim in the source · abstract, characters 767–855 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

COPT1 showed significant homology to a yeast chromosome VIII open reading frame encoding 189 residues.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
COPT1e0
Outcome
significant homologye0
Value
189 amino acid residuese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“COPT1 shows significant homology to an open reading frame of 189 amino acid residues on yeast chromosome VIII.”

✓ located verbatim in the source · abstract, characters 870–980 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

A CTR2 mutation increased yeast resistance to toxic copper.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
A mutation in CTR2e0
Gene
CTR2e0
Outcome
resistance to toxic copper concentrationse0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“A mutation in CTR2 displays a higher level of resistance to toxic copper concentrations.”

✓ located verbatim in the source · abstract, characters 1085–1173 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

CTR2 overexpression increased resistance to copper starvation.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
Overexpression of CTR2e0
Gene
CTR2e0
Outcome
resistance to copper starvatione0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Overexpression of CTR2 provides increased resistance to copper starvation”

✓ located verbatim in the source · abstract, characters 1174–1247 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

CTR2 overexpression increased sensitivity to copper toxicity.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
Overexpression of CTR2e0
Gene
CTR2e0
Outcome
sensitivity to copper toxicitye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Overexpression of CTR2 provides increased resistance to copper starvation and is also associated with an increased sensitivity to copper toxicity.”

✓ located verbatim in the source · abstract, characters 1174–1320 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

CTR2 contains three potential transmembrane domains, like Arabidopsis COPT1.

Taxon
ArabidopsisArabidopsise0
Gene
CTR2e0
Outcome
three potential transmembrane domainse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The amino acid sequence of CTR2, like Arabidopsis COPT1, contains three potential transmembrane domains.”

✓ located verbatim in the source · abstract, characters 1321–1425 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors infer that COPT1 is likely involved in copper transport.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
Copper Transportert1
Outcome
transport of coppere0
Qualifier
most likelye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“a plant metal transporter, which is most likely involved in the transport of copper, has been identified.”

✓ located verbatim in the source · abstract, characters 1464–1569 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 41–61 · show in text ↑
t1

“Copper Transporter”

✓ located verbatim in the source · title, characters 62–80 · show in text ↑

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6 papers: 5 positive, 1 negative or no effect

5 in the opposite direction

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loss of function · disease · Arabidopsis thaliana (thale cress)Positive and negative results

82 papers: 31 positive, 51 negative or no effect

30 papers in the same direction as this paper · 51 in the opposite direction

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.