Paper · 2015 · PLANT PHYSIOLOGY

Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation

Peng Yu; Kai Eggert; Nicolaus von Wirén; et al.

10
claims
19
verbatim quotes
76
citations
3
research areas
✓
Open access · cc-by

Abstract

Plants have evolved a unique plasticity of their root system architecture to flexibly exploit heterogeneously distributed mineral elements from soil. Local high concentrations of nitrate trigger lateral root initiation in adult shoot-borne roots of maize (Zea mays) by increasing the frequency of early divisions of phloem pole pericycle cells. Gene expression profiling revealed that, within 12 h of local high nitrate induction, cell cycle activators (cyclin-dependent kinases and cyclin B) were up-regulated, whereas repressors (Kip-related proteins) were down-regulated in the pericycle of shoot-borne roots. In parallel, a ubiquitin protein ligase S-Phase Kinase-Associated Protein1-cullin-F-box protein(S-Phase Kinase-Associated Protein 2B)-related proteasome pathway participated in cell cycle control. The division of pericycle cells was preceded by increased levels of free indole-3-acetic acid in the stele, resulting in DR5-red fluorescent protein-marked auxin response maxima at the phloem poles. Moreover, laser-capture microdissection-based gene expression analyses indicated that, at the same time, a significant local high nitrate induction of the monocot-specific PIN-FORMED9 gene in phloem pole cells modulated auxin efflux to pericycle cells. Time-dependent gene expression analysis further indicated that local high nitrate availability resulted in PIN-FORMED9-mediated auxin efflux and subsequent cell cycle activation, which culminated in the initiation of lateral root primordia. This study provides unique insights into how adult maize roots translate information on heterogeneous nutrient availability into targeted root developmental responses.

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Claims 10

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Local high nitrate triggered lateral root initiation in maize shoot borne roots.

Taxon
maizeZea mayse0
Organ / stage
adult shoot-borne rootse0
Treatment
Local high concentrations of nitratee0
Outcome
lateral root initiatione0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Local high concentrations of nitrate trigger lateral root initiation in adult shoot-borne roots of maize (Zea mays)”

✓ located verbatim in the source · abstract, characters 150–265 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Local high nitrate increased early divisions of phloem pole pericycle cells.

Taxon
maizeZea mayse0
Treatment
Local high concentrations of nitratee0
Outcome
frequency of early divisions of phloem pole pericycle cellse0
Direction
increasinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Local high concentrations of nitrate trigger lateral root initiation in adult shoot-borne roots of maize (Zea mays) by increasing the frequency of early divisions of phloem pole pericycle cells.”

✓ located verbatim in the source · abstract, characters 150–344 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Cell cycle activators were up regulated within 12 hours of nitrate induction.

Taxon
MaizeZea mayst0
Treatment
local high nitrate inductione0
Gene
cyclin-dependent kinases and cyclin Be0
Outcome
cell cycle activatorse0
Direction
up-regulatede0
Qualifier
within 12 he0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“within 12 h of local high nitrate induction, cell cycle activators (cyclin-dependent kinases and cyclin B) were up-regulated”

✓ located verbatim in the source · abstract, characters 386–510 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Kip related repressors were down regulated in the pericycle after nitrate induction.

Taxon
MaizeZea mayst0
Organ / stage
pericycle of shoot-borne rootse0
Treatment
local high nitrate inductione1
Gene
Kip-related proteinse0
Outcome
repressorse0
Direction
down-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“repressors (Kip-related proteins) were down-regulated in the pericycle of shoot-borne roots.”

✓ located verbatim in the source · abstract, characters 520–612 · show in text ↑
e1

“within 12 h of local high nitrate induction”

✓ located verbatim in the source · abstract, characters 386–429 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

An SKP1 cullin F box related proteasome pathway participated in cell cycle control.

Taxon
MaizeZea mayst0
Gene
S-Phase Kinase-Associated Protein 2Be0
Outcome
cell cycle controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a ubiquitin protein ligase S-Phase Kinase-Associated Protein1-cullin-F-box protein(S-Phase Kinase-Associated Protein 2B)-related proteasome pathway participated in cell cycle control.”

✓ located verbatim in the source · abstract, characters 626–809 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Free indole 3 acetic acid rose in the stele before pericycle division.

Taxon
MaizeZea mayst0
Organ / stage
stelee0
Outcome
levels of free indole-3-acetic acide0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The division of pericycle cells was preceded by increased levels of free indole-3-acetic acid in the stele”

✓ located verbatim in the source · abstract, characters 810–916 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Auxin response maxima appeared at phloem poles.

Taxon
MaizeZea mayst0
Organ / stage
phloem polese0
Outcome
auxin response maximae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“resulting in DR5-red fluorescent protein-marked auxin response maxima at the phloem poles.”

✓ located verbatim in the source · abstract, characters 918–1008 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Local high nitrate significantly induced PIN-FORMED9 in phloem pole cells.

Taxon
MaizeZea mayst0
Organ / stage
phloem pole cellse0
Treatment
local high nitratee0
Gene
PIN-FORMED9e0
Outcome
inductione0
Direction
inductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a significant local high nitrate induction of the monocot-specific PIN-FORMED9 gene in phloem pole cells”

✓ located verbatim in the source · abstract, characters 1114–1218 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

PIN-FORMED9 modulated auxin efflux to pericycle cells.

Taxon
MaizeZea mayst0
Gene
PIN-FORMED9e0
Outcome
auxin efflux to pericycle cellse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“PIN-FORMED9 gene in phloem pole cells modulated auxin efflux to pericycle cells.”

✓ located verbatim in the source · abstract, characters 1181–1261 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Nitrate availability caused PIN-FORMED9 mediated auxin efflux and subsequent cell cycle activation culminating in lateral root primordia.

Taxon
MaizeZea mayst0
Treatment
local high nitrate availabilitye0
Gene
PIN-FORMED9e0
Outcome
initiation of lateral root primordiae0
Qualifier
auxin efflux and subsequent cell cycle activatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“local high nitrate availability resulted in PIN-FORMED9-mediated auxin efflux and subsequent cell cycle activation, which culminated in the initiation of lateral root primordia.”

✓ located verbatim in the source · abstract, characters 1325–1502 · show in text ↑
t0

“Maize”

✓ located verbatim in the source · title, characters 146–151 · show in text ↑

nitrogen · molecular: metabolites · Zea mays (maize)Positive and negative results

142 papers: 95 positive, 47 negative or no effect

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nitrogen · growth · Zea mays (maize)Positive and negative results

748 papers: 619 positive, 129 negative or no effect

618 papers in the same direction as this paper · 115 in the opposite direction · 14 reporting no difference from an alternative

  1. positive
  2. negative
  3. no effect

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.