Paper · 2017 · The Plant Cell

Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1

Yang Liu; Yurong Xie; Hai Wang; et al.

11
claims
22
verbatim quotes
112
citations
2
research areas
✓
Open access

Abstract

Plants have evolved an array of adaptive responses to low Pi availability, a process modulated by various external stimuli and endogenous growth regulatory signals. Little is known about how these signaling processes interact to produce an integrated response. Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1) encodes a conserved MYB-type transcription factor that is essential for programming Pi starvation-induced gene expression and downstream Pi starvation responses (PSRs). Here, we show that loss-of-function mutations in FHY3 and FAR1, encoding two positive regulators of phytochrome signaling, and in EIN3, encoding a master regulator of ethylene responses, cause attenuated PHR1 expression, whereas mutation in HY5, encoding another positive regulator of light signaling, causes increased PHR1 expression. FHY3, FAR1, HY5, and EIN3 directly bind to the PHR1 promoter through distinct cis-elements. FHY3, FAR1, and EIN3 activate, while HY5 represses, PHR1 expression. FHY3 directly interacts with EIN3, and HY5 suppresses the transcriptional activation activity of FHY3 and EIN3 on PHR1. Finally, both light and ethylene promote FHY3 protein accumulation, and ethylene blocks the light-promoted stabilization of HY5. Our results suggest that light and ethylene coordinately regulate PHR1 expression and PSRs through signaling convergence at the PHR1 promoter.

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Claims 11

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

FHY3, FAR1 and EIN3 loss of function attenuated PHR1 expression.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
loss-of-function mutations in FHY3 and FAR1e1
Gene
PHR1e0
Outcome
PHR1 expressione1
Direction
attenuatede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“loss-of-function mutations in FHY3 and FAR1, encoding two positive regulators of phytochrome signaling, and in EIN3, encoding a master regulator of ethylene responses, cause attenuated PHR1 expression”

✓ located verbatim in the source · abstract, characters 508–708 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

HY5 mutation increased PHR1 expression.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
mutation in HY5e1
Gene
PHR1e0
Outcome
PHR1 expressione1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“mutation in HY5, encoding another positive regulator of light signaling, causes increased PHR1 expression”

✓ located verbatim in the source · abstract, characters 718–823 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

FHY3, FAR1, HY5 and EIN3 directly bound distinct cis-elements of the PHR1 promoter.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
FHY3, FAR1, HY5, and EIN3e1
Outcome
bind to the PHR1 promotere1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“FHY3, FAR1, HY5, and EIN3 directly bind to the PHR1 promoter through distinct cis-elements”

✓ located verbatim in the source · abstract, characters 825–915 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

FHY3, FAR1 and EIN3 activated PHR1 expression.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
FHY3, FAR1, and EIN3e1
Outcome
PHR1 expressione1
Direction
activatee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“FHY3, FAR1, and EIN3 activate, while HY5 represses, PHR1 expression”

✓ located verbatim in the source · abstract, characters 917–984 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

HY5 repressed PHR1 expression.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
HY5e1
Outcome
PHR1 expressione1
Direction
repressese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“HY5 represses, PHR1 expression”

✓ located verbatim in the source · abstract, characters 954–984 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

FHY3 directly interacted with EIN3.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
FHY3e1
Outcome
interacts with EIN3e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“FHY3 directly interacts with EIN3”

✓ located verbatim in the source · abstract, characters 986–1019 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

HY5 suppressed FHY3 and EIN3 transcriptional activation of PHR1.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
HY5e1
Outcome
transcriptional activation activity of FHY3 and EIN3 on PHR1e1
Direction
suppressese1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“HY5 suppresses the transcriptional activation activity of FHY3 and EIN3 on PHR1”

✓ located verbatim in the source · abstract, characters 1025–1104 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Light promoted FHY3 protein accumulation.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
lighte1
Gene
FHY3e1
Outcome
FHY3 protein accumulatione1
Direction
promotee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“both light and ethylene promote FHY3 protein accumulation”

✓ located verbatim in the source · abstract, characters 1115–1172 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Ethylene promoted FHY3 protein accumulation.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
ethylenee1
Gene
FHY3e1
Outcome
FHY3 protein accumulatione1
Direction
promotee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“both light and ethylene promote FHY3 protein accumulation”

✓ located verbatim in the source · abstract, characters 1115–1172 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Ethylene blocked light-promoted HY5 stabilization.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
ethylenee1
Gene
HY5e1
Outcome
light-promoted stabilization of HY5e1
Direction
blockse1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“ethylene blocks the light-promoted stabilization of HY5”

✓ located verbatim in the source · abstract, characters 1178–1233 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer coordinated light and ethylene regulation of PHR1 expression and phosphate starvation responses through the PHR1 promoter.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Gene
PHR1e1
Outcome
PHR1 expression and PSRse1
Qualifier
signaling convergence at the PHR1 promotere1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Arabidopsis thaliana PHOSPHATE STARVATION RESPONSE1 (PHR1)”

✓ located verbatim in the source · abstract, characters 261–319 · show in text ↑
e1

“light and ethylene coordinately regulate PHR1 expression and PSRs through signaling convergence at the PHR1 promoter”

✓ located verbatim in the source · abstract, characters 1260–1376 · show in text ↑

ethene · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

18 papers: 8 positive, 10 negative or no effect

7 papers in the same direction as this paper · 10 in the opposite direction

  1. no effect
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light · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

47 papers: 32 positive, 15 negative or no effect

31 papers in the same direction as this paper · 15 in the opposite direction

  1. negative
  2. no effect
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loss of function · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

73 papers: 13 positive, 60 negative or no effect

12 papers in the same direction as this paper · 60 in the opposite direction

  1. negative
  2. negative
  3. negative

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.