Paper · 2020 · BMC Genomics

Physiological and transcriptomic analyses reveal the roles of secondary metabolism in the adaptive responses of Stylosanthes to manganese toxicity

Yidan Jia; Xinyong Li; Qin Liu; et al.

13
claims
18
verbatim quotes
54
citations
2
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: As a heavy metal, manganese (Mn) can be toxic to plants. Stylo (Stylosanthes) is an important tropical legume that exhibits tolerance to high levels of Mn. However, little is known about the adaptive responses of stylo to Mn toxicity. Thus, this study integrated both physiological and transcriptomic analyses of stylo subjected to Mn toxicity. RESULTS: Results showed that excess Mn treatments increased malondialdehyde (MDA) levels in leaves of stylo, resulting in the reduction of leaf chlorophyll concentrations and plant dry weight. In contrast, the activities of enzymes, such as peroxidase (POD), phenylalanine ammonia-lyase (PAL) and polyphenol oxidase (PPO), were significantly increased in stylo leaves upon treatment with increasing Mn levels, particularly Mn levels greater than 400 μM. Transcriptome analysis revealed 2471 up-regulated and 1623 down-regulated genes in stylo leaves subjected to Mn toxicity. Among them, a set of excess Mn up-regulated genes, such as genes encoding PAL, cinnamyl-alcohol dehydrogenases (CADs), chalcone isomerase (CHI), chalcone synthase (CHS) and flavonol synthase (FLS), were enriched in secondary metabolic processes based on gene ontology (GO) analysis. Numerous genes associated with transcription factors (TFs), such as genes belonging to the C2H2 zinc finger transcription factor, WRKY and MYB families, were also regulated by Mn in stylo leaves. Furthermore, the C2H2 and MYB transcription factors were predicted to be involved in the transcriptional regulation of genes that participate in secondary metabolism in stylo during Mn exposure. Interestingly, the activation of secondary metabolism-related genes probably resulted in increased levels of secondary metabolites, including total phenols, flavonoids, tannins and anthocyanidins. CONCLUSIONS: Taken together, this study reveals the roles of secondary metabolism in the adaptive responses of stylo to Mn toxicity, which is probably regulated by specific transcription factors.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 13

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Excess Mn increased leaf MDA levels in stylo.

Organ / stage
leavese0
Treatment
excess Mn treatmentse0
Outcome
malondialdehyde (MDA) levelse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“excess Mn treatments increased malondialdehyde (MDA) levels in leaves of stylo”

✓ located verbatim in the source · abstract, characters 386–464 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Excess Mn reduced stylo leaf chlorophyll concentrations.

Treatment
manganese toxicityt0
Outcome
leaf chlorophyll concentrationse0
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“resulting in the reduction of leaf chlorophyll concentrations and plant dry weight”

✓ located verbatim in the source · abstract, characters 466–548 · show in text ↑
t0

“Stylosanthes to manganese toxicity”

✓ located verbatim in the source · title, characters 112–146 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Excess Mn reduced stylo plant dry weight.

Treatment
manganese toxicityt0
Outcome
plant dry weighte0
Direction
reductione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“resulting in the reduction of leaf chlorophyll concentrations and plant dry weight”

✓ located verbatim in the source · abstract, characters 466–548 · show in text ↑
t0

“Stylosanthes to manganese toxicity”

✓ located verbatim in the source · title, characters 112–146 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Increasing Mn significantly increased POD activity in stylo leaves.

Treatment
increasing Mn levelse0
Gene
peroxidase (POD)e0
Outcome
activities of enzymese0
Direction
increasede0
Qualifier
particularly Mn levels greater than 400 μMe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“the activities of enzymes, such as peroxidase (POD), phenylalanine ammonia-lyase (PAL) and polyphenol oxidase (PPO), were significantly increased in stylo leaves upon treatment with increasing Mn levels, particularly Mn levels greater than 400 μM”

✓ located verbatim in the source · abstract, characters 563–809 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Increasing Mn significantly increased PAL activity in stylo leaves.

Treatment
increasing Mn levelse0
Gene
phenylalanine ammonia-lyase (PAL)e0
Outcome
activities of enzymese0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“the activities of enzymes, such as peroxidase (POD), phenylalanine ammonia-lyase (PAL) and polyphenol oxidase (PPO), were significantly increased in stylo leaves upon treatment with increasing Mn levels, particularly Mn levels greater than 400 μM”

✓ located verbatim in the source · abstract, characters 563–809 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Increasing Mn significantly increased PPO activity in stylo leaves.

Treatment
increasing Mn levelse0
Gene
polyphenol oxidase (PPO)e0
Outcome
activities of enzymese0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“the activities of enzymes, such as peroxidase (POD), phenylalanine ammonia-lyase (PAL) and polyphenol oxidase (PPO), were significantly increased in stylo leaves upon treatment with increasing Mn levels, particularly Mn levels greater than 400 μM”

✓ located verbatim in the source · abstract, characters 563–809 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mn toxicity upregulated 2471 genes in stylo leaves.

Treatment
Mn toxicitye0
Outcome
genese0
Direction
up-regulatede0
Value
2471e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Transcriptome analysis revealed 2471 up-regulated and 1623 down-regulated genes in stylo leaves subjected to Mn toxicity.”

✓ located verbatim in the source · abstract, characters 811–932 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mn toxicity downregulated 1623 genes in stylo leaves.

Treatment
Mn toxicitye0
Outcome
genese0
Direction
down-regulatede0
Value
1623e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Transcriptome analysis revealed 2471 up-regulated and 1623 down-regulated genes in stylo leaves subjected to Mn toxicity.”

✓ located verbatim in the source · abstract, characters 811–932 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Excess Mn upregulated secondary metabolism genes including PAL, CADs, and CHI.

Treatment
excess Mne0
Gene
PAL, cinnamyl-alcohol dehydrogenases (CADs), chalcone isomerase (CHI)e0
Outcome
secondary metabolic processese0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“a set of excess Mn up-regulated genes, such as genes encoding PAL, cinnamyl-alcohol dehydrogenases (CADs), chalcone isomerase (CHI), chalcone synthase (CHS) and flavonol synthase (FLS), were enriched in secondary metabolic processes”

✓ located verbatim in the source · abstract, characters 945–1177 · show in text ↑
t0

“Stylosanthes”

✓ located verbatim in the source · title, characters 112–124 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mn regulated stylo C2H2, WRKY, and MYB transcription factor genes.

Treatment
Mne0
Gene
C2H2 zinc finger transcription factor, WRKY and MYB familiese0
Outcome
genese0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“genes belonging to the C2H2 zinc finger transcription factor, WRKY and MYB families, were also regulated by Mn in stylo leaves.”

✓ located verbatim in the source · abstract, characters 1284–1411 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

C2H2 and MYB factors were predicted to regulate secondary metabolism genes during Mn exposure.

Gene
C2H2 and MYB transcription factorse0
Outcome
transcriptional regulation of genes that participate in secondary metabolisme0
Qualifier
predictede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“the C2H2 and MYB transcription factors were predicted to be involved in the transcriptional regulation of genes that participate in secondary metabolism in stylo during Mn exposure.”

✓ located verbatim in the source · abstract, characters 1425–1606 · show in text ↑
Intervention effectauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Mn exposure probably increased phenols, flavonoids, and tannins.

Treatment
manganese toxicityt0
Outcome
total phenols, flavonoids, tanninse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“increased levels of secondary metabolites, including total phenols, flavonoids, tannins and anthocyanidins.”

✓ located verbatim in the source · abstract, characters 1696–1803 · show in text ↑
t0

“Stylosanthes to manganese toxicity”

✓ located verbatim in the source · title, characters 112–146 · show in text ↑
Intervention effectauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Mn exposure probably increased anthocyanidins.

Treatment
manganese toxicityt0
Outcome
anthocyanidinse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Stylosanthes guianensis
Stylosanthes guianensis · TaxonHarry Rose from South West Rocks, Australia · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“increased levels of secondary metabolites, including total phenols, flavonoids, tannins and anthocyanidins.”

✓ located verbatim in the source · abstract, characters 1696–1803 · show in text ↑
t0

“Stylosanthes to manganese toxicity”

✓ located verbatim in the source · title, characters 112–146 · show in text ↑

manganese atom · physiology: pigments · Stylosanthes guianensis (stylo)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
See all 3 papers →

manganese atom · growth · Stylosanthes guianensis (stylo)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
See all 3 papers →

manganese atom · physiology: oxidative · Stylosanthes guianensis (stylo)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

manganese atom · molecular: metabolites · Stylosanthes guianensis (stylo)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.