Paper · 2021 · Frontiers in Plant Science

Integrated Analysis of the Transcriptome and Metabolome Revealed the Molecular Mechanisms Underlying the Enhanced Salt Tolerance of Rice Due to the Application of Exogenous Melatonin

Ziyan Xie; Juan Wang; Wensheng Wang; et al.

11
claims
22
verbatim quotes
92
citations
2
research areas
✓
Open access · cc-by

Abstract

High salinity is one of the major abiotic stresses limiting rice production. Melatonin has been implicated in the salt tolerance of rice. However, the molecular basis of melatonin-mediated salt tolerance in rice remains unclear. In the present study, we performed an integrated transcriptome and metabolome profiling of rice seedlings treated with salt, melatonin, or salt + melatonin. The application of exogenous melatonin increased the salt tolerance of rice plants by decreasing the sodium content to maintain Na + /K + homeostasis, alleviating membrane lipid oxidation, and enhancing chlorophyll contention. A comparative transcriptome analysis revealed that complex molecular pathways contribute to melatonin-mediated salt tolerance. More specifically, the AP2/EREBP–HB–WRKY transcriptional cascade and phytohormone (e.g., auxin and abscisic acid) signaling pathways were activated by an exogenous melatonin treatment. On the basis of metabolome profiles, 64 metabolites, such as amino acids, organic acids, nucleotides, and secondary metabolites, were identified with increased abundances only in plants treated with salt + melatonin. Several of these metabolites including endogenous melatonin and its intermediates (5-hydroxy- L -tryptophan, N 1 -acetyl- N 2 -formyl-5-methoxykynuramine), gallic acid, diosmetin, and cyanidin 3- O -galactoside had antioxidant functions, suggesting melatonin activates multiple antioxidant pathways to alleviate the detrimental effects of salt stress. Combined transcriptome and metabolome analyses revealed a few gene–metabolite networks related to various pathways, including linoleic acid metabolism and amino acid metabolism that are important for melatonin-mediated salt tolerance. The data presented herein may be useful for further elucidating the multiple regulatory roles of melatonin in plant responses to abiotic stresses.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 11

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous melatonin increased salt tolerance of rice.

Treatment
exogenous melatonine1
Outcome
salt tolerancee1
Direction
increasede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e1

“The application of exogenous melatonin increased the salt tolerance of rice plants by decreasing the sodium content to maintain Na + /K + homeostasis, alleviating membrane lipid oxidation, and enhancing chlorophyll contention”

✓ located verbatim in the source · abstract, characters 386–611 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous melatonin decreased sodium content in salt-stressed rice.

Treatment
exogenous melatonine1
Outcome
sodium contente1
Direction
decreasinge1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e1

“The application of exogenous melatonin increased the salt tolerance of rice plants by decreasing the sodium content to maintain Na + /K + homeostasis, alleviating membrane lipid oxidation, and enhancing chlorophyll contention”

✓ located verbatim in the source · abstract, characters 386–611 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous melatonin alleviated membrane lipid oxidation in salt-stressed rice.

Treatment
exogenous melatonine1
Outcome
membrane lipid oxidatione1
Direction
alleviatinge1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e1

“The application of exogenous melatonin increased the salt tolerance of rice plants by decreasing the sodium content to maintain Na + /K + homeostasis, alleviating membrane lipid oxidation, and enhancing chlorophyll contention”

✓ located verbatim in the source · abstract, characters 386–611 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous melatonin enhanced chlorophyll contention in salt-stressed rice.

Treatment
exogenous melatonine1
Outcome
chlorophyll contentione1
Direction
enhancinge1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e1

“The application of exogenous melatonin increased the salt tolerance of rice plants by decreasing the sodium content to maintain Na + /K + homeostasis, alleviating membrane lipid oxidation, and enhancing chlorophyll contention”

✓ located verbatim in the source · abstract, characters 386–611 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Exogenous melatonin activated the AP2/EREBP–HB–WRKY transcriptional cascade in rice.

Treatment
exogenous melatonin treatmente2
Gene
AP2/EREBP–HB–WRKYe2
Outcome
AP2/EREBP–HB–WRKY transcriptional cascadee2
Direction
activatede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e2

“the AP2/EREBP–HB–WRKY transcriptional cascade and phytohormone (e.g., auxin and abscisic acid) signaling pathways were activated by an exogenous melatonin treatment”

✓ located verbatim in the source · abstract, characters 759–923 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Exogenous melatonin activated phytohormone signaling pathways, including auxin and abscisic acid, in rice.

Treatment
exogenous melatonin treatmente2
Compound
auxin and abscisic acide2
Outcome
signaling pathwayse2
Direction
activatede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e2

“the AP2/EREBP–HB–WRKY transcriptional cascade and phytohormone (e.g., auxin and abscisic acid) signaling pathways were activated by an exogenous melatonin treatment”

✓ located verbatim in the source · abstract, characters 759–923 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

64 metabolites increased in abundance only in rice treated with salt and melatonin.

Treatment
salt + melatonine3
Outcome
increased abundancese3
Direction
increasede3
Value
64 metabolitese3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e3

“On the basis of metabolome profiles, 64 metabolites, such as amino acids, organic acids, nucleotides, and secondary metabolites, were identified with increased abundances only in plants treated with salt + melatonin”

✓ located verbatim in the source · abstract, characters 925–1140 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Gallic acid, diosmetin and cyanidin 3-O-galactoside have antioxidant functions in salt-stressed rice.

Compound
gallic acid, diosmetin, and cyanidin 3- O -galactosidee4
Outcome
antioxidant functionse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e4

“Several of these metabolites including endogenous melatonin and its intermediates (5-hydroxy- L -tryptophan, N 1 -acetyl- N 2 -formyl-5-methoxykynuramine), gallic acid, diosmetin, and cyanidin 3- O -galactoside had antioxidant functions”

✓ located verbatim in the source · abstract, characters 1142–1378 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Melatonin activates multiple antioxidant pathways to alleviate the detrimental effects of salt stress.

Treatment
melatonine5
Outcome
antioxidant pathwayse5
Qualifier
alleviate the detrimental effects of salt stresse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e5

“suggesting melatonin activates multiple antioxidant pathways to alleviate the detrimental effects of salt stress”

✓ located verbatim in the source · abstract, characters 1380–1492 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Gene–metabolite networks in linoleic acid and amino acid metabolism are important for melatonin-mediated salt tolerance in rice.

Outcome
melatonin-mediated salt tolerancee6
Qualifier
linoleic acid metabolism and amino acid metabolisme6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e6

“Combined transcriptome and metabolome analyses revealed a few gene–metabolite networks related to various pathways, including linoleic acid metabolism and amino acid metabolism that are important for melatonin-mediated salt tolerance”

✓ located verbatim in the source · abstract, characters 1494–1727 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Complex molecular pathways contribute to melatonin-mediated salt tolerance in rice.

Outcome
melatonin-mediated salt tolerancee7
Qualifier
complex molecular pathwayse7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Melatonin has been implicated in the salt tolerance of rice”

✓ located verbatim in the source · abstract, characters 77–136 · show in text ↑
e7

“A comparative transcriptome analysis revealed that complex molecular pathways contribute to melatonin-mediated salt tolerance”

✓ located verbatim in the source · abstract, characters 613–738 · show in text ↑

melatonin · molecular: metabolites · Oryza sativa (rice)Positive and negative results

16 papers: 14 positive, 2 negative or no effect

13 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. no effect
  3. no effect

12 papers more in this group

See all 16 papers →

melatonin · physiology: ion balance · Oryza sativa (rice)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

melatonin · tolerance: abiotic · Oryza sativa (rice)Results agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive
See all 4 papers →

melatonin · physiology: pigments · Oryza sativa (rice)Results agree

10 papers: 10 positive, 0 negative or no effect

9 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

6 papers more in this group

See all 10 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.