Paper · 2022 · Plant Cell & Environment

ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice

Yi Chen; Zhipan Xiang; Min Liu; et al.

10
claims
20
verbatim quotes
89
citations
4
research areas
—
Not open access

Abstract

Preharvest sprouting (PHS) is an unfavorable trait in cereal crops and causes serious yield loss. However, the molecular mechanism underlying PHS remains largely elusive. Here, we identified a member of 9-cis-epoxycarotenoid dioxygenase family, OsNCED3, which regulates PHS and grain development in rice (Oryza sativa L.). OsNCED3 encodes a chloroplast-localized abscisic acid (ABA) biosynthetic enzyme highly expressed in the embryo of developing seeds. Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice. However, the overexpression of OsNCED3 enhanced PHS resistance by regulating proper ABA/GA ratio in the embryo. Intriguingly, the overexpression of OsNCED3 resulted in increased grain size and weight, whereas the disruption of OsNCED3 function decreased grain size and weight. Nucleotide diversity analyses suggested that OsNCED3 may be selected during japonica populations adaptation of seed dormancy and germination. Taken together, we have identified a new OsNCED regulator involved rice PHS and grain development, and provide a potential target gene for improving PHS resistance and grain development in rice.

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Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

OsNCED3 is a chloroplast-localized ABA biosynthetic enzyme expressed highly in developing seed embryos.

Organ / stage
embryo of developing seedse0
Gene
OsNCED3e0
Outcome
chloroplast-localized abscisic acid (ABA) biosynthetic enzyme highly expressed in the embryo of developing seedse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“OsNCED3 encodes a chloroplast-localized abscisic acid (ABA) biosynthetic enzyme highly expressed in the embryo of developing seeds.”

✓ located verbatim in the source · abstract, characters 323–454 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

OsNCED3 disruption lowered embryo ABA.

Organ / stage
embryoe0
Treatment
Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesise0
Gene
OsNCED3e0
Outcome
ABAe0
Direction
lowere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice.”

✓ located verbatim in the source · abstract, characters 455–756 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

OsNCED3 disruption raised embryo GA.

Organ / stage
embryoe0
Treatment
Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesise0
Gene
OsNCED3e0
Outcome
gibberellic acid (GA) levelse0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice.”

✓ located verbatim in the source · abstract, characters 455–756 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

OsNCED3 disruption promoted embryo growth and broke dormancy before maturity and harvest.

Treatment
Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesise0
Gene
OsNCED3e0
Outcome
promoting embryos growth and breaking seed dormancy before seed maturity and harveste0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice.”

✓ located verbatim in the source · abstract, characters 455–756 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

OsNCED3 disruption decreased seed dormancy.

Treatment
Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesise0
Gene
OsNCED3e0
Outcome
seed dormancye0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice.”

✓ located verbatim in the source · abstract, characters 455–756 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

OsNCED3 disruption enhanced preharvest sprouting.

Treatment
Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesise0
Gene
OsNCED3e0
Outcome
PHSe0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Disruption of OsNCED3 by CRISPR/Cas9-mediated mutagenesis led to a lower ABA and higher gibberellic acid (GA) levels (thus a skewed ABA/GA ratio) in the embryo, promoting embryos growth and breaking seed dormancy before seed maturity and harvest, thus decreased seed dormancy and enhanced PHS in rice.”

✓ located verbatim in the source · abstract, characters 455–756 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

OsNCED3 overexpression enhanced preharvest sprouting resistance.

Treatment
overexpression of OsNCED3e0
Gene
OsNCED3e0
Outcome
PHS resistancee0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“However, the overexpression of OsNCED3 enhanced PHS resistance by regulating proper ABA/GA ratio in the embryo.”

✓ located verbatim in the source · abstract, characters 757–868 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

OsNCED3 overexpression increased grain size and weight.

Treatment
overexpression of OsNCED3e0
Gene
OsNCED3e0
Outcome
grain size and weighte0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Intriguingly, the overexpression of OsNCED3 resulted in increased grain size and weight, whereas the disruption of OsNCED3 function decreased grain size and weight.”

✓ located verbatim in the source · abstract, characters 869–1033 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

OsNCED3 disruption decreased grain size and weight.

Treatment
disruption of OsNCED3 functione0
Gene
OsNCED3e0
Outcome
grain size and weighte0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Intriguingly, the overexpression of OsNCED3 resulted in increased grain size and weight, whereas the disruption of OsNCED3 function decreased grain size and weight.”

✓ located verbatim in the source · abstract, characters 869–1033 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Nucleotide diversity suggested selection of OsNCED3 during japonica adaptation of dormancy and germination.

Material
japonica populationse0
Gene
OsNCED3e0
Outcome
adaptation of seed dormancy and germinatione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“rice”

✓ located verbatim in the source · title, characters 102–106 · show in text ↑
e0

“Nucleotide diversity analyses suggested that OsNCED3 may be selected during japonica populations adaptation of seed dormancy and germination.”

✓ located verbatim in the source · abstract, characters 1034–1175 · show in text ↑

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loss of function · growth · Oryza sativa (rice)Positive and negative results

132 papers: 28 positive, 104 negative or no effect

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134 papers: 62 positive, 72 negative or no effect

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.