Paper · 2022 · Frontiers in Plant Science

Comparative physiological and transcriptomics analysis revealed crucial mechanisms of silicon-mediated tolerance to iron deficiency in tomato

Yu Shi; Shuxun Guo; Xin Zhao; et al.

9
claims
18
verbatim quotes
15
citations
2
research areas
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Open access · cc-by

Abstract

Iron (Fe) deficiency is a common abiotic stress in plants grown in alkaline soil that causes leaf chlorosis and affects root development due to low plant-available Fe concentration. Silicon (Si) is a beneficial element for plant growth and can also improve plant tolerance to abiotic stress. However, the effect of Si and regulatory mechanisms on tomato plant growth under Fe deficiency remain largely unclear. Here, we examined the effect of Si application on the photosynthetic capacity, antioxidant defense, sugar metabolism, and organic acid contents under Fe deficiency in tomato plants. The results showed that Si application promoted plant growth by increasing photosynthetic capacity, strengthening antioxidant defense, and reprogramming sugar metabolism. Transcriptomics analysis (RNA-seq) showed that Si application under Fe deficiency up-regulated the expression of genes related to antioxidant defense, carbohydrate metabolism and organic acid synthesis. In addition, Si application under Fe deficiency increased Fe distribution to leaves and roots. Combined with physiological assessment and molecular analysis, these findings suggest that Si application can effectively increase plant tolerance to low Fe stress and thus can be implicated in agronomic management of Fe deficiency for sustainable crop production. Moreover, these findings provide important information for further exploring the genes and underlying regulatory mechanisms of Si-mediated low Fe stress tolerance in crop plants.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon promoted tomato growth under iron deficiency.

Treatment
Si applicatione0
Outcome
plant growthe0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Si application promoted plant growth”

✓ located verbatim in the source · abstract, characters 617–653 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 135–141 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon increased photosynthetic capacity.

Treatment
silicont0
Outcome
photosynthetic capacitye0
Direction
increasinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“increasing photosynthetic capacity”

✓ located verbatim in the source · abstract, characters 657–691 · show in text ↑
t0

“silicon-mediated tolerance to iron deficiency in tomato”

✓ located verbatim in the source · title, characters 86–141 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon strengthened antioxidant defense.

Treatment
silicont0
Outcome
antioxidant defensee0
Direction
strengtheninge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“strengthening antioxidant defense”

✓ located verbatim in the source · abstract, characters 693–726 · show in text ↑
t0

“silicon-mediated tolerance to iron deficiency in tomato”

✓ located verbatim in the source · title, characters 86–141 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Silicon reprogrammed sugar metabolism.

Treatment
silicont0
Outcome
sugar metabolisme0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“reprogramming sugar metabolism”

✓ located verbatim in the source · abstract, characters 732–762 · show in text ↑
t0

“silicon-mediated tolerance to iron deficiency in tomato”

✓ located verbatim in the source · title, characters 86–141 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under iron deficiency, silicon upregulated antioxidant defense genes.

Treatment
Si applicatione0
Outcome
expression of genes related to antioxidant defensee0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Si application under Fe deficiency up-regulated the expression of genes related to antioxidant defense, carbohydrate metabolism and organic acid synthesis”

✓ located verbatim in the source · abstract, characters 811–965 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 135–141 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under iron deficiency, silicon upregulated carbohydrate metabolism genes.

Treatment
Si applicatione0
Outcome
expression of genes related to antioxidant defense, carbohydrate metabolisme0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Si application under Fe deficiency up-regulated the expression of genes related to antioxidant defense, carbohydrate metabolism and organic acid synthesis”

✓ located verbatim in the source · abstract, characters 811–965 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 135–141 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under iron deficiency, silicon upregulated organic acid synthesis genes.

Treatment
Si applicatione0
Outcome
expression of genes related to antioxidant defense, carbohydrate metabolism and organic acid synthesise0
Direction
up-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Si application under Fe deficiency up-regulated the expression of genes related to antioxidant defense, carbohydrate metabolism and organic acid synthesis”

✓ located verbatim in the source · abstract, characters 811–965 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 135–141 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under iron deficiency, silicon increased iron distribution to leaves and roots.

Treatment
Si applicatione0
Outcome
Fe distribution to leaves and rootse0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Si application under Fe deficiency increased Fe distribution to leaves and roots”

✓ located verbatim in the source · abstract, characters 980–1060 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 135–141 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Authors infer silicon can increase tolerance to low iron stress.

Treatment
Si applicatione0
Outcome
plant tolerance to low Fe stresse0
Direction
increasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Si application can effectively increase plant tolerance to low Fe stress”

✓ located verbatim in the source · abstract, characters 1153–1225 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 135–141 · show in text ↑

silicon atom · growth · Solanum lycopersicum (tomato)Results differ

30 papers: 28 positive, 2 negative or no effect

27 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. no effect

26 papers more in this group

See all 30 papers →

silicon atom · molecular: expression · Solanum lycopersicum (tomato)Positive and negative results

7 papers: 6 positive, 1 negative or no effect

5 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

3 papers more in this group

See all 7 papers →

silicon atom · nutrient: content · Solanum lycopersicum (tomato)Positive and negative results

26 papers: 25 positive, 1 negative or no effect

24 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. no effect
  3. positive

22 papers more in this group

See all 26 papers →

silicon atom · disease · Solanum lycopersicum (tomato)Results agree

9 papers: 9 positive, 0 negative or no effect

8 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

5 papers more in this group

See all 9 papers →

silicon atom · physiology: photosynthesis · Solanum lycopersicum (tomato)Results agree

9 papers: 9 positive, 0 negative or no effect

8 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

5 papers more in this group

See all 9 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.