Paper · 2024 · Journal of Basic Microbiology

Plant growth‐promoting and biocontrol traits of endophytic Bacillus licheniformis against soft rot causing Pythium myriotylum in ginger plant

Khaloud Mohammed Alarjani; Mohamed S. Elshikh

16
claims
39
verbatim quotes
11
citations
3
research areas
—
Not open access

Abstract

Abstract Bacterial endophytes from plants harbor diverse metabolites that play major roles in biocontrol and improve plant growth. In this study, a total of 12 endophytic bacteria were isolated from the ginger rhizome. The strain K3 was highly effective in preventing mycelia growth of Pythium myriotylum (78.5 ± 1.5% inhibition) in dual culture. The cell‐free extract (2.5%) of endophyte K3 inhibited 76.3 ± 4.8% mycelia growth, and 92.4 ± 4.2% inhibition was observed at a 5% sample concentration. The secondary metabolites produced by Bacillus licheniformis K3 showed maximum activity against Pseudomonas syringae (24 ± 1 mm zone of inhibition) and Xanthomonas campestris (28 ± 3 mm zone of inhibition). The strain K3 produced 28.3 ± 1.7 IU mL −1 protease, 28.3 ± 1.7 IU mL −1 cellulase, and 2.04 ± 0.13 IU mL −1 chitinase, respectively. The ginger rhizome treated with K3 in the greenhouse registered 53.8 ± 1.4% soft rot incidence, and the streptomycin‐treated pot registered 78.3 ± 1.7% disease incidence. The selected endophyte K3 improved ascorbate peroxidase (1.37 ± 0.009 µmole ASC min −1 mg −1 protein), catalase (8.7 ± 0.28 µmole min −1 mg −1 protein), and phenylalanine ammonia‐lyase (26.2 ± 0.99 Umg −1 ) in the greenhouse. In addition, K3 treatment in the field trial improved rhizome yield (730 ± 18.4 g) after 180 days ( p < 0.01). The shoot length was 46 ± 8.3 cm in K3‐treated plants, and it was about 31% higher than the control treatment ( p < 0.01). The lytic enzyme‐producing and growth‐promoting endophyte is useful in sustainable crop production through the management of biotic stress.

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Claims 16

Observationobservedoriginal resultmeasured

Claim · model-written summary

Twelve endophytic bacteria were isolated from the ginger rhizome.

Organ / stage
rhizomee1
Outcome
endophytic bacteria were isolatede1
Value
12e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“a total of 12 endophytic bacteria were isolated from the ginger rhizome”

✓ located verbatim in the source · abstract, characters 146–217 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Strain K3 was highly effective in preventing mycelial growth of Pythium myriotylum in dual culture (78.5 +/- 1.5% inhibition).

Treatment
The strain K3e1
Interactor
Pythium myriotylumPythium myriotylume1pathogen
Second interactor
K3e1biocontrol_agent
Outcome
mycelia growth of Pythium myriotylume1
Direction
preventinge1
Value
78.5 ± 1.5% inhibitione1
Setting
dual culturee1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The strain K3 was highly effective in preventing mycelia growth of Pythium myriotylum (78.5 ± 1.5% inhibition) in dual culture”

✓ located verbatim in the source · abstract, characters 219–345 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The cell-free extract (2.5%) of endophyte K3 inhibited Pythium myriotylum mycelial growth by 76.3 +/- 4.8%.

Treatment
cell‐free extract (2.5%) of endophyte K3e1
Interactor
endophyte K3e1biocontrol_agent
Outcome
mycelia growthe1
Direction
inhibitede1
Value
76.3 ± 4.8%e1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The cell‐free extract (2.5%) of endophyte K3 inhibited 76.3 ± 4.8% mycelia growth”

✓ located verbatim in the source · abstract, characters 347–428 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

A 5% concentration of the K3 cell-free extract gave 92.4 +/- 4.2% inhibition of Pythium myriotylum mycelial growth.

Treatment
5% sample concentratione1
Outcome
inhibitione1
Direction
inhibitione1
Value
92.4 ± 4.2%e1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“92.4 ± 4.2% inhibition was observed at a 5% sample concentration”

✓ located verbatim in the source · abstract, characters 434–498 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Secondary metabolites of Bacillus licheniformis K3 showed maximum activity against Pseudomonas syringae (24 +/- 1 mm zone of inhibition).

Treatment
secondary metabolites produced by Bacillus licheniformis K3e1
Interactor
Pseudomonas syringaePseudomonas syringaee1pathogen
Second interactor
Bacillus licheniformis K3Bacillus licheniformise1biocontrol_agent
Outcome
zone of inhibitione1
Direction
maximum activitye1
Value
24 ± 1 mme1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗
Pseudomonas syringae
Pseudomonas syringae · InteractorHoward F. Schwartz · CC BY 3.0 us · Wikimedia Commons ↗
Bacillus licheniformis
Bacillus licheniformis · Second interactorStefan Walkowski · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The secondary metabolites produced by Bacillus licheniformis K3 showed maximum activity against Pseudomonas syringae (24 ± 1 mm zone of inhibition)”

✓ located verbatim in the source · abstract, characters 500–647 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Secondary metabolites of Bacillus licheniformis K3 showed maximum activity against Xanthomonas campestris (28 +/- 3 mm zone of inhibition).

Treatment
secondary metabolites produced by Bacillus licheniformis K3e1
Interactor
Xanthomonas campestrisXanthomonas campestrise1pathogen
Second interactor
Bacillus licheniformis K3Bacillus licheniformise1biocontrol_agent
Outcome
zone of inhibitione1
Direction
maximum activitye1
Value
28 ± 3 mme1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗
Xanthomonas campestris
Xanthomonas campestris · InteractorScot Nelson · CC0 · Wikimedia Commons ↗
Bacillus licheniformis
Bacillus licheniformis · Second interactorStefan Walkowski · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The secondary metabolites produced by Bacillus licheniformis K3 showed maximum activity against Pseudomonas syringae (24 ± 1 mm zone of inhibition) and Xanthomonas campestris (28 ± 3 mm zone of inhibition)”

✓ located verbatim in the source · abstract, characters 500–705 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Strain K3 produced protease at 28.3 +/- 1.7 IU mL-1.

Taxon
Bacillus licheniformisBacillus licheniformist0
Outcome
proteasee1
Value
28.3 ± 1.7 IU mL −1e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Bacillus licheniformis
Bacillus licheniformis · TaxonStefan Walkowski · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Bacillus licheniformis”

✓ located verbatim in the source · title, characters 59–81 · show in text ↑
e1

“The strain K3 produced 28.3 ± 1.7 IU mL −1 protease”

✓ located verbatim in the source · abstract, characters 707–758 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Strain K3 produced cellulase at 28.3 +/- 1.7 IU mL-1.

Taxon
Bacillus licheniformisBacillus licheniformist0
Outcome
cellulasee1
Value
28.3 ± 1.7 IU mL −1e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Bacillus licheniformis
Bacillus licheniformis · TaxonStefan Walkowski · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Bacillus licheniformis”

✓ located verbatim in the source · title, characters 59–81 · show in text ↑
e1

“28.3 ± 1.7 IU mL −1 cellulase”

✓ located verbatim in the source · abstract, characters 760–789 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Strain K3 produced chitinase at 2.04 +/- 0.13 IU mL-1.

Taxon
Bacillus licheniformisBacillus licheniformist0
Outcome
chitinasee1
Value
2.04 ± 0.13 IU mL −1e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Bacillus licheniformis
Bacillus licheniformis · TaxonStefan Walkowski · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Bacillus licheniformis”

✓ located verbatim in the source · title, characters 59–81 · show in text ↑
e1

“2.04 ± 0.13 IU mL −1 chitinase”

✓ located verbatim in the source · abstract, characters 795–825 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Ginger rhizome treated with K3 in the greenhouse showed 53.8 +/- 1.4% soft rot incidence versus 78.3 +/- 1.7% disease incidence in the streptomycin-treated pot.

Treatment
ginger rhizome treated with K3e1
Interactor
Pythium myriotylumPythium myriotylumt1pathogen
Outcome
soft rot incidencee1
Direction
lowerinferrede1
Value
53.8 ± 1.4%e1
Qualifier
78.3 ± 1.7% disease incidencee1
Comparator
streptomycin‐treated pote1
Setting
greenhousee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
t1

“Pythium myriotylum”

✓ located verbatim in the source · title, characters 107–125 · show in text ↑
e1

“The ginger rhizome treated with K3 in the greenhouse registered 53.8 ± 1.4% soft rot incidence, and the streptomycin‐treated pot registered 78.3 ± 1.7% disease incidence”

✓ located verbatim in the source · abstract, characters 841–1010 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

K3 improved ascorbate peroxidase (1.37 +/- 0.009 umole ASC min-1 mg-1 protein) in the greenhouse.

Treatment
endophyte K3e1
Outcome
ascorbate peroxidasee1
Direction
improvede1
Value
1.37 ± 0.009 µmole ASC min −1 mg −1 proteine1
Setting
greenhousee2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The selected endophyte K3 improved ascorbate peroxidase (1.37 ± 0.009 µmole ASC min −1 mg −1 protein)”

✓ located verbatim in the source · abstract, characters 1012–1113 · show in text ↑
e2

“in the greenhouse. In addition”

✓ located verbatim in the source · abstract, characters 1219–1249 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

K3 improved catalase (8.7 +/- 0.28 umole min-1 mg-1 protein) in the greenhouse.

Treatment
endophyte K3e1
Outcome
catalasee2
Direction
improvede1
Value
8.7 ± 0.28 µmole min −1 mg −1 proteine2
Setting
greenhousee3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The selected endophyte K3 improved”

✓ located verbatim in the source · abstract, characters 1012–1046 · show in text ↑
e2

“catalase (8.7 ± 0.28 µmole min −1 mg −1 protein)”

✓ located verbatim in the source · abstract, characters 1115–1163 · show in text ↑
e3

“in the greenhouse. In addition”

✓ located verbatim in the source · abstract, characters 1219–1249 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

K3 improved phenylalanine ammonia-lyase (26.2 +/- 0.99 U mg-1) in the greenhouse.

Treatment
endophyte K3e1
Outcome
phenylalanine ammonia‐lyasee2
Direction
improvede1
Value
26.2 ± 0.99 Umg −1e2
Setting
greenhousee3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The selected endophyte K3 improved”

✓ located verbatim in the source · abstract, characters 1012–1046 · show in text ↑
e2

“phenylalanine ammonia‐lyase (26.2 ± 0.99 Umg −1 )”

✓ located verbatim in the source · abstract, characters 1169–1218 · show in text ↑
e3

“in the greenhouse. In addition”

✓ located verbatim in the source · abstract, characters 1219–1249 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

K3 treatment in the field trial improved rhizome yield (730 +/- 18.4 g) after 180 days (p < 0.01).

Treatment
K3 treatmente1
Outcome
rhizome yielde1
Direction
improvede1
Value
730 ± 18.4 ge1
Setting
field triale1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“K3 treatment in the field trial improved rhizome yield (730 ± 18.4 g) after 180 days ( p < 0.01)”

✓ located verbatim in the source · abstract, characters 1251–1347 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Shoot length in K3-treated plants was 46 +/- 8.3 cm, about 31% higher than the control treatment (p < 0.01).

Treatment
K3e1
Outcome
shoot lengthe1
Direction
highere2
Value
31%e2
Qualifier
46 ± 8.3 cme1
Comparator
control treatmente2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“The shoot length was 46 ± 8.3 cm in K3”

✓ located verbatim in the source · abstract, characters 1349–1387 · show in text ↑
e2

“about 31% higher than the control treatment ( p < 0.01)”

✓ located verbatim in the source · abstract, characters 1415–1470 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors conclude the lytic enzyme-producing, growth-promoting endophyte is useful in sustainable crop production through management of biotic stress.

Outcome
sustainable crop productione1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zingiber officinale
Zingiber officinale · TaxonGreg III Espera · CC BY 4.0 · iNaturalist ↗

Verbatim

t0

“ginger”

✓ located verbatim in the source · title, characters 129–135 · show in text ↑
e1

“is useful in sustainable crop production through the management of biotic stress”

✓ located verbatim in the source · abstract, characters 1530–1610 · show in text ↑

botanical · growth · Zingiber officinale (ginger)Positive and negative results

3 papers: 2 positive, 1 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
See all 3 papers →

inoculation · growth · Zingiber officinale (ginger)Positive and negative results

5 papers: 4 positive, 1 negative or no effect

3 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.