Paper · 2025 · Plant Communications

UPL3 promotes BZR1 degradation, growth arrest, and seedling survival under starvation stress in Arabidopsis

Zhenzhen Zhang; Hongliang Zhang; Lei Feng; et al.

11
claims
25
verbatim quotes
2
citations
2
research areas
✓
Open access

Abstract

Sugar-mediated regulation of hormone signaling is crucial for optimizing growth under normal conditions and ensuring survival during environmental stress. Previous studies have shown that sugar starvation induces the degradation of BRASSINAZOLE RESISTANT 1 (BZR1), the master transcription factor of the brassinosteroid (BR) signaling pathway, thereby inhibiting growth. However, the molecular mechanism linking sugar signaling to BZR1 degradation remains unknown. To identify proteins that mediate starvation-induced BZR1 degradation, we performed a quantitative proteomic analysis of the BZR1 interactome under starvation conditions and identified UBIQUITIN PROTEIN LIGASE 3 (UPL3) as a sugar-regulated protein that promotes BZR1 degradation and regulates growth and survival in response to sugar availability. upl3 mutants showed increased BZR1 accumulation and larger seedling size compared to the wild type under sugar-limiting conditions, but not when grown on sugar-containing medium, which indicates that UPL3 mediates BZR1 degradation and growth inhibition under sugar-limited conditions. Although upl3 mutations promoted growth under short-term starvation, they substantially reduced survival under long-term starvation. The enhanced growth phenotype of upl3 was also observed when target of rapamycin (TOR) was inactivated, but not when BR biosynthesis was blocked, suggesting that UPL3 acts downstream of sugar-TOR signaling to regulate BZR1 degradation. Furthermore, UPL3 protein levels increased post-transcriptionally in response to starvation and TOR inhibition, and decreased upon sugar treatment. Our study identifies UPL3 as a key molecular link between sugar signaling and BR signaling. We propose that sugar-TOR signaling inhibits UPL3 to promote BZR1 accumulation and growth, thereby optimizing plant growth and survival in response to sugar availability.

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Claims 11

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

upl3 mutants showed increased BZR1 accumulation compared with wild type under sugar-limiting conditions.

Taxon
ArabidopsisArabidopsist0
Material
upl3 mutantse1
Treatment
sugar-limiting conditionse1
Gene
BZR1e1
Outcome
BZR1 accumulatione1
Direction
increasede1
Comparator
wild typee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e1

“upl3 mutants showed increased BZR1 accumulation and larger seedling size compared to the wild type under sugar-limiting conditions”

✓ located verbatim in the source · abstract, characters 813–943 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

upl3 mutants had larger seedlings than wild type under sugar-limiting conditions.

Taxon
ArabidopsisArabidopsist0
Material
upl3 mutantse1
Treatment
sugar-limiting conditionse1
Outcome
seedling sizee1
Direction
largere1
Comparator
wild typee1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e1

“upl3 mutants showed increased BZR1 accumulation and larger seedling size compared to the wild type under sugar-limiting conditions”

✓ located verbatim in the source · abstract, characters 813–943 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

The upl3 seedling phenotype was not present when plants were grown on sugar-containing medium.

Taxon
ArabidopsisArabidopsist0
Material
upl3e1
Treatment
sugar-containing mediume2
Outcome
seedling sizee1
Direction
no_changeinferrede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e1

“upl3 mutants showed increased BZR1 accumulation and larger seedling size compared to the wild type under sugar-limiting conditions”

✓ located verbatim in the source · abstract, characters 813–943 · show in text ↑
e2

“but not when grown on sugar-containing medium”

✓ located verbatim in the source · abstract, characters 945–990 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

upl3 mutations promoted growth under short-term starvation.

Taxon
ArabidopsisArabidopsist0
Material
upl3 mutationse3
Treatment
short-term starvatione3
Outcome
growthe3
Direction
promotede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e3

“Although upl3 mutations promoted growth under short-term starvation, they substantially reduced survival under long-term starvation”

✓ located verbatim in the source · abstract, characters 1098–1229 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

upl3 mutations substantially reduced survival under long-term starvation.

Taxon
ArabidopsisArabidopsist0
Material
upl3 mutationse3
Treatment
long-term starvatione3
Outcome
survivale3
Direction
substantially reducede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e3

“Although upl3 mutations promoted growth under short-term starvation, they substantially reduced survival under long-term starvation”

✓ located verbatim in the source · abstract, characters 1098–1229 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The enhanced growth phenotype of upl3 was also observed when TOR was inactivated.

Taxon
ArabidopsisArabidopsist0
Material
upl3e4
Treatment
target of rapamycin (TOR) was inactivatede4
Outcome
growth phenotypee4
Direction
enhancede4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e4

“The enhanced growth phenotype of upl3 was also observed when target of rapamycin (TOR) was inactivated”

✓ located verbatim in the source · abstract, characters 1231–1333 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

The enhanced growth phenotype of upl3 was not observed when BR biosynthesis was blocked.

Taxon
ArabidopsisArabidopsist0
Material
upl3e4
Treatment
BR biosynthesis was blockede5
Outcome
growth phenotypee4
Direction
no_changeinferrede5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e4

“The enhanced growth phenotype of upl3 was also observed when target of rapamycin (TOR) was inactivated”

✓ located verbatim in the source · abstract, characters 1231–1333 · show in text ↑
e5

“but not when BR biosynthesis was blocked”

✓ located verbatim in the source · abstract, characters 1335–1375 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UPL3 protein levels increased post-transcriptionally in response to starvation and TOR inhibition.

Taxon
ArabidopsisArabidopsist0
Treatment
starvation and TOR inhibitione6
Gene
UPL3e6
Outcome
UPL3 protein levelse6
Direction
increasede6
Qualifier
post-transcriptionallye6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e6

“UPL3 protein levels increased post-transcriptionally in response to starvation and TOR inhibition, and decreased upon sugar treatment”

✓ located verbatim in the source · abstract, characters 1480–1613 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UPL3 protein levels decreased upon sugar treatment.

Taxon
ArabidopsisArabidopsist0
Treatment
sugar treatmente6
Gene
UPL3e6
Outcome
UPL3 protein levelse6
Direction
decreasede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e6

“UPL3 protein levels increased post-transcriptionally in response to starvation and TOR inhibition, and decreased upon sugar treatment”

✓ located verbatim in the source · abstract, characters 1480–1613 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

UPL3 mediates BZR1 degradation and growth inhibition under sugar-limited conditions.

Taxon
ArabidopsisArabidopsist0
Gene
UPL3e0
Outcome
BZR1 degradatione1
Qualifier
under sugar-limited conditionse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e0

“identified UBIQUITIN PROTEIN LIGASE 3 (UPL3) as a sugar-regulated protein that promotes BZR1 degradation”

✓ located verbatim in the source · abstract, characters 639–743 · show in text ↑
e1

“UPL3 mediates BZR1 degradation and growth inhibition under sugar-limited conditions”

✓ located verbatim in the source · abstract, characters 1013–1096 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

UPL3 acts downstream of sugar-TOR signaling to regulate BZR1 degradation.

Taxon
ArabidopsisArabidopsist0
Gene
UPL3e7
Outcome
BZR1 degradatione7
Qualifier
downstream of sugar-TOR signalinge7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis”

✓ located verbatim in the source · title, characters 93–107 · show in text ↑
e7

“UPL3 acts downstream of sugar-TOR signaling to regulate BZR1 degradation”

✓ located verbatim in the source · abstract, characters 1393–1465 · show in text ↑

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.