Search claims · PlantClaims

Observationobservedoriginal resultmeasured

Claim · model-written summary

m5 and m6 were phenotypically and genetically similar.

Gene: m5 and m6e0
Outcome: phenotypically and genetically similare0

Not reportedTaxon

Verbatim

e0
“Alleles m5 and m6 are phenotypically and genetically similar”
✓ located verbatim in the source · abstract, characters 1100–1160

Title

Alfalfa transposable elements and variegation

E. T. Bingham; W. M. Clement Developmental Genetics 1989. doi:10.1002/dvg.1020100614

Other claims from this paper (13)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Ear maps revealed seed sectors producing phenotypically similar allelic mutants.

Taxon: maizeZea mayst0
Gene: Mue0
Outcome: sectors of seeds that produced plants bearing phenotypically similar allelic mutantse0

Verbatim

e0
“ear maps of Mu-bearing plants, which revealed sectors of seeds that produced plants bearing phenotypically similar allelic mutants”
✓ located verbatim in the source · abstract, characters 594–724

t0
“MAIZE”
✓ located verbatim in the source · title, characters 29–34

Title

THE TIMING OF Mu ACTIVITY IN MAIZE

Donald S Robertson Genetics 1980. doi:10.1093/genetics/94.4.969

Other claims from this paper (5)

Observation In male outcrosses 18.6% of phenotypically similar Mu mutants were allelic.
Observation Premeiotic Mu mutants were induced.
Association Small sector size suggested very late premeiotic Mu activity.
Observation No visible sectors were found in mature sporophyte, endosperm or aleurone tissue.
Association Mu mutator activity seemed restricted to shortly before or during meiosis.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

The weak agap mutant was phenotypically similar to knr6.

Taxon: maizeZea mayse0
Treatment: weak agap mutante3
Outcome: phenotypicallye3
Direction: similare3
Comparator: knr6e3

Verbatim

e0
“ear inflorescences of maize (Zea mays L.)”
✓ located verbatim in the source · abstract, characters 224–265

e3
“The weak agap mutant was phenotypically similar to knr6, showing short ears with fewer kernels”
✓ located verbatim in the source · abstract, characters 870–964

Title

The Coordinated KNR6–AGAP–ARF1 Complex Modulates Vegetative and Reproductive Traits by Participating in Vesicle Trafficking in Maize

Manfei Li; Ran Zhao; Yanfang Du; et al. Cells 2021. doi:10.3390/cells10102601

Other claims from this paper (10)

Intervention effect The loss-of-function AGAP mutant had a defective Golgi apparatus with thin and compact cisternae.
Intervention effect The loss-of-function AGAP mutant had delayed internalization.
Intervention effect The loss-of-function AGAP mutant repressed vesicle agglomeration.
Intervention effect The loss-of-function AGAP mutant had defective inflorescences and roots.
Intervention effect The loss-of-function AGAP mutant produced dwarfed plants with small leaves.
Observation AGAP was preferentially localized to the Golgi apparatus.
Intervention effect The weak agap mutant had short ears.
Intervention effect The weak agap mutant had fewer kernels.
Observation AGAP interacted with KNR6.
Intervention effect The agap knr6 double mutant had shorter inflorescence meristems and mature ears than the single mutants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

In male outcrosses 18.6% of phenotypically similar Mu mutants were allelic.

Taxon: maizeZea mayst0
Gene: Mue0
Outcome: allelice0
Value: 18.6%e0

Verbatim

e0
“Allelism tests of phenotypically similar mutants in outcrosses of Mu plants as males established that 18.6% were allelic”
✓ located verbatim in the source · abstract, characters 399–519

t0
“MAIZE”
✓ located verbatim in the source · title, characters 29–34

Title

THE TIMING OF Mu ACTIVITY IN MAIZE

Donald S Robertson Genetics 1980. doi:10.1093/genetics/94.4.969

Other claims from this paper (5)

Observation Premeiotic Mu mutants were induced.
Observation Ear maps revealed seed sectors producing phenotypically similar allelic mutants.
Association Small sector size suggested very late premeiotic Mu activity.
Observation No visible sectors were found in mature sporophyte, endosperm or aleurone tissue.
Association Mu mutator activity seemed restricted to shortly before or during meiosis.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

IlSVP-overexpressing plants resembled wild type phenotypically.

Taxon: ArabidopsisArabidopsise1
Treatment: overexpressing IlSVPe0
Gene: IlSVPe0
Outcome: phenotypically similare0
Direction: similare0
Comparator: wild typee0

Verbatim

e0
“plants overexpressing IlSVP were phenotypically similar to that of wild type”
✓ located verbatim in the source · abstract, characters 1324–1400

e1
“Ectopic expression of IlSEP3 in Arabidopsis”
✓ located verbatim in the source · abstract, characters 1083–1126

t0
“Iris laevigata”
✓ located verbatim in the source · title, characters 52–66

Title

Identification of MADS-Box Transcription Factors in Iris laevigata and Functional Assessment of IlSEP3 and IlSVP during Flowering

Guiling Liu; Fengyi Li; Gongfa Shi; et al. International Journal of Molecular Sciences 2022. doi:10.3390/ijms23179950

Other claims from this paper (8)

Method / resource Transcriptome data revealed 41 putative MADS-box genes.
Observation Eight type I MADS-box members were identified.
Observation Thirty-three type II MADS-box members were identified.
Observation IlSEP3 and IlSVP localized to the nucleus.
Association IlSEP3 and IlSVP physically interacted in vitro.
Intervention effect Ectopic IlSEP3 expression advanced flowering in Arabidopsis to 32 days versus 36 days in controls.
Mechanism The authors proposed that IlSEP3 effects on flowering could involve expression of seven flowering genes.
Mechanism The authors inferred that IlSEP3 regulates flowering in Iris laevigata.

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Diverse genetic mechanisms can produce phenotypically similar responses to soil water deficits.

Taxon: switchgrassPanicum virgatumt0
Outcome: phenotypically similar responsese0
Qualifier: complex and diverse genetic mechanismse0

Verbatim

e0
“The strong across-experiment correlations between physiological plasticity-but not differential gene expression-highlight the complex and diverse genetic mechanisms that can produce phenotypically similar responses to various soil water deficits.”
✓ located verbatim in the source · abstract, characters 1225–1471

t0
“switchgrass”
✓ located verbatim in the source · title, characters 98–109

Title

Promises and challenges of eco-physiological genomics in the field: tests of drought responses in switchgrass

John T. Lovell; Eugene V Shakirov; Scott Schwartz; et al. PLANT PHYSIOLOGY 2016. doi:10.1104/pp.16.00545

Other claims from this paper (7)

Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

ravl1/d61-1 resembled ravl1 phenotypically.

Taxon: riceOryza sativat0
Material: ravl1/d61-1e0
Outcome: phenotypically similare0
Comparator: ravl1 mutante0

Verbatim

e0
“The double mutant ravl1/d61-1 was phenotypically similar to the ravl1 mutant.”
✓ located verbatim in the source · abstract, characters 510–587

t0
“Rice”
✓ located verbatim in the source · title, characters 105–109

Title

RAVL1 Activates Brassinosteroids and Ethylene Signaling to Modulate Response to Sheath Blight Disease in Rice

De Peng Yuan; Chong Zhang; Zi Yuan Wang; et al. Phytopathology 2018. doi:10.1094/phyto-03-18-0085-r

Other claims from this paper (8)

Observation d61-1 and d2 mutants were less susceptible than wild type.
Observation bri1-D was more susceptible than wild type.
Observation ravl1 and d61-1/EIL1 Ri5 were similarly susceptible to wild type.
Mechanism RAVL1 may directly activate EIL1.
Observation ers1 and d61-1/RAVL1 OX mutants resisted sheath blight.
Observation EIL1 RNAi mutants and RAVL1 OX were more susceptible than wild type.
Mechanism RAVL1 activates BRI1/D2 independently of BR signaling.
Mechanism RAVL1 activates EIL1 independently of ethylene signaling.

Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

The spacer provides molecular evidence that the phenotypically similar species are genetically distinct.

Taxon: Eleutheranthera ruderalisEleutheranthera ruderalise1
Outcome: genetically different from each othere0
Comparator: Synedrella nodiflorae1

Verbatim

e0
“This provides molecular evidence that the two phenotypically similar species are genetically different from each other.”
✓ located verbatim in the source · abstract, characters 1304–1423

e1
“Ogiera (Eleutheranthera ruderalis) and nodeweed (Synedrella nodiflora) are two different weed species”
✓ located verbatim in the source · abstract, characters 210–311

Title

Molecular characteristics of two phenotypically identical species of Asteraceae based on the intergenic spacer trnT(UGU)-trnL(UAA)

AGUS HERY SUSANTO; Murni Dwiati; Salabila Pratiwi Biodiversitas Journal of Biological Diversity 2020. doi:10.13057/biodiv/d211122

Other claims from this paper (2)

Observation The two species differed in spacer indels and base substitutions.
Observation The IGS sequence was longer in E. ruderalis than S. nodiflora.

Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Type 2 plants resembled wild type phenotypically.

Taxon: riceOryza sativat0
Material: Type 2e0
Outcome: similar phenotypes to WTe0
Direction: similare0

Verbatim

e0
“Type 2 had similar phenotypes to WT”
✓ located verbatim in the source · abstract, characters 3917–3952

t0
“rice”
✓ located verbatim in the source · title, characters 44–48

Title

Production of novel beneficial alleles of a rice yield‐related QTL by CRISPR/Cas9

Yongtao Cui; Xingming Hu; Guohua Liang; et al. Plant Biotechnology Journal 2020. doi:10.1111/pbi.13370

Other claims from this paper (19)

Association Three QTLs were associated with stem cross-section area.
Association Nipponbare alleles at qSCSA1-1 and qSCSA6-1 increased SCSA.
Association The 93-11 allele at qSCSA3-1 increased culm strength.
Observation qSCSA3-1 mapped to a 51-kb region containing OsTB1.
Observation OsTB1 expression in 93-11 inflorescences exceeded that in NPB and NIL-93-11.
Intervention effect Introgression of the NPB allele decreased bending stress.
Intervention effect Introgression of the NPB allele decreased stem area and spikelets per panicle.
Intervention effect Introgression of the NPB allele increased tiller number.
Intervention effect Introgression of the NPB allele did not affect plant height.
Intervention effect The OsTB1 null mutant had lower bending stress than rescued plants.
Intervention effect The OsTB1 null mutant had smaller panicles than rescued plants.
Intervention effect The OsTB1 null mutant had increased tiller number relative to rescued plants.
Observation Four large-SCSA varieties carried a TGTG insertion.
Method / resource Editing generated 23 rice plants with nine mutations.
Intervention effect Type 1 plants had more tillers and smaller culms and panicles than wild type.
Intervention effect Type 3 plants had fewer tillers and larger culms and panicles than wild type.
Intervention effect Type 3 edits increased OsTB1 expression.
Intervention effect Type 1 edits reduced OsTB1 expression.
Intervention effect Type 2 edits left OsTB1 expression unchanged.

Observationobservedoriginal resultmeasured

Claim · model-written summary

mbd9 mutant plants resembled arp6 mutants phenotypically.

Taxon: ArabidopsisArabidopsist0
Outcome: phenotypically similare0

Verbatim

e0
“mbd9 mutant plants were phenotypically similar to arp6 mutants”
✓ located verbatim in the source · abstract, characters 779–841

t0
“Arabidopsis genome”
✓ located verbatim in the source · title, characters 131–149

Title

Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome

Paja Sijacic; Dylan H. Holder; Marko Bajic; et al. PLoS Genetics 2019. doi:10.1371/journal.pgen.1008326

Other claims from this paper (9)

“phenotypically similar”

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