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Taxon: Arabidopsis ✕

Taxon groups are the verbatim names found in the abstracts (case-insensitive), not normalised: maize, corn and Zea mays are separate groups here. The Organism view merges them through NCBI Taxonomy.

Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

The MtCAS31 and AtICE1 interaction is hypothesized to cause the decrease in stomatal density that enhances drought resistance in transgenic Arabidopsis.

Taxon
ArabidopsisArabidopsise6
Gene
AtICE1e6
Outcome
decrease in stomatal densitye6
Qualifier
the interaction of MtCAS31 and AtICE1e6

Verbatim

e6

“We hypothesize that the interaction of MtCAS31 and AtICE1 caused the decrease in stomatal density to enhance the drought resistance of transgenic Arabidopsis”

✓ located verbatim in the source · abstract, characters 1421–1578

Title

Overexpression of MtCAS31 enhances drought tolerance in transgenic Arabidopsis by reducing stomatal density

Can Xie; Rongxue Zhang; Yueting Qu; et al. New Phytologist 2012. doi:10.1111/j.1469-8137.2012.04136.x

Other claims from this paper (4)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

A decrease in leaf optical density affects the apparent NPQ rise kinetic.

Taxon
ArabidopsisArabidopsist0
Outcome
apparent non-photochemical quenching (NPQ) rise kinetice7
Qualifier
a decrease in leaf optical densitye7

Verbatim

e7

“we conclude that a decrease in leaf optical density affects the apparent non-photochemical quenching (NPQ) rise kinetic”

✓ located verbatim in the source · abstract, characters 1547–1666
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 136–147

Title

Interaction between avoidance of photon absorption, excess energy dissipation and zeaxanthin synthesis against photooxidative stress in Arabidopsis

Stefano Cazzaniga; Luca Dall' Osto; Sam‐Geun Kong; et al. The Plant Journal 2013. doi:10.1111/tpj.12314

Other claims from this paper (7)
Associationobservedoriginal resultmeasured

Claim · model-written summary

As ICK2/KRP2 levels decrease, the increase in Arabidopsis lateral root density depends on CYCD2;1.

Taxon
ArabidopsisArabidopsist0
Treatment
ICK2/KRP2 levels decreasee5
Gene
CYCD2;1e5
Outcome
lateral root densitye5
Direction
increasee5

Verbatim

t0

“The Arabidopsis D-Type Cyclin CYCD2;1”

✓ located verbatim in the source · title, characters 0–37
e5

“as ICK2/KRP2 levels decrease, the increase in lateral root density depends on CYCD2;1”

✓ located verbatim in the source · abstract, characters 1135–1220

Title

The Arabidopsis D-Type Cyclin CYCD2;1 and the Inhibitor ICK2/KRP2 Modulate Auxin-Induced Lateral Root Formation

Luis Sanz; Walter Dewitte; Celine Forzani; et al. The Plant Cell 2011. doi:10.1105/tpc.110.080002

Other claims from this paper (10)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

SEC3A puncta density did not decrease after these cells stopped growing.

Taxon
ArabidopsisArabidopsist0
Outcome
density of punctae0
Direction
does not decreasee0
Qualifier
after growth terminatione0

Verbatim

t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 4–15
e0

“The density of puncta does not decrease after growth termination of these cells, but decreases strongly when exocytosis is inhibited by treatment with brefeldin A.”

✓ located verbatim in the source · abstract, characters 935–1098

Title

The Arabidopsis exocyst subunit SEC3A is essential for embryo development and accumulates in transient puncta at the plasma membrane

Ying Zhang; Richard Immink; Chun‐Ming Liu; et al. New Phytologist 2013. doi:10.1111/nph.12236

Other claims from this paper (7)
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

OsYDA1 overexpression significantly decreased stomatal density in Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Treatment
Overexpressione0
Gene
OsYDA1e1
Outcome
stomatal densitye0
Direction
decreasee0

Not reportedComparator

Verbatim

e0

“Overexpression of either of these genes in Arabidopsis resulted in a significant decrease in stomatal density and water-loss rate.”

✓ located verbatim in the source · abstract, characters 555–685
e1

“OsYDA1 and OsYDA2”

✓ located verbatim in the source · abstract, characters 537–554

Title

Characterization of Rice OsYDA Gene in Regulating Stomatal Development

Zheng Guo 2011

Other claims from this paper (6)
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

OsYDA2 overexpression significantly decreased stomatal density in Arabidopsis.

Taxon
ArabidopsisArabidopsise0
Treatment
Overexpressione0
Gene
OsYDA2e1
Outcome
stomatal densitye0
Direction
decreasee0

Not reportedComparator

Verbatim

e0

“Overexpression of either of these genes in Arabidopsis resulted in a significant decrease in stomatal density and water-loss rate.”

✓ located verbatim in the source · abstract, characters 555–685
e1

“OsYDA1 and OsYDA2”

✓ located verbatim in the source · abstract, characters 537–554

Title

Characterization of Rice OsYDA Gene in Regulating Stomatal Development

Zheng Guo 2011

Other claims from this paper (6)
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Mutation of both ASF1 genes decreased chromatin density.

Taxon
ArabidopsisArabidopsise0
Treatment
Simultaneous mutation of both Arabidopsis ASF1 genese0
Gene
ASF1e0
Outcome
chromatin densitye0
Direction
decreasee0

Not reportedComparator

Verbatim

e0

“Simultaneous mutation of both Arabidopsis ASF1 genes caused a decrease in chromatin density and ectopic H3.1 occupancy at loci typically enriched with H3.3.”

✓ located verbatim in the source · abstract, characters 526–682

Title

Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis

Zhenhui Zhong; Yafei Wang; Ming Wang; et al. Nature Communications 2022. doi:10.1038/s41467-022-34648-0

Other claims from this paper (9)
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Low phosphorus in the lower medium reduced lateral root density more than low phosphorus in the upper medium.

Taxon
ArabidopsisArabidopsist0
Treatment
down part LPe0
Outcome
density of lateral roots (DLR)e0
Direction
decreasee0
Comparator
upper LPe0

Verbatim

e0

“The down part LP was more effective to arrest PR growth as well as to decrease density of lateral roots (DLR) than the upper LP”

✓ located verbatim in the source · abstract, characters 561–688
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 60–71
t1

“Arabidopsis”

✓ located verbatim in the source · title, characters 60–71

Title

The involvement of auxin in root architecture plasticity in Arabidopsis induced by heterogeneous phosphorus availability

Q. Liu; G. Q. Zhou; F. Xu; et al. Biologia Plantarum 2013. doi:10.1007/s10535-013-0327-z

Other claims from this paper (11)
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

SDD1 overexpression decreased stomatal density twofold to threefold.

Taxon
ArabidopsisArabidopsist0
Treatment
SDD1 overexpressione0
Gene
SDD1e0
Outcome
stomatal densitye0
Direction
decreasee0
Value
twofold to threefolde0
Comparator
wild typee0

Verbatim

e0

“SDD1 overexpression in the wild type leads to a phenotype opposite to that caused by the sdd1-1 mutation, with a twofold to threefold decrease in stomatal density and the formation of arrested stomata”

✓ located verbatim in the source · abstract, characters 652–852
t0

“Arabidopsis Stomatal Development”

✓ located verbatim in the source · title, characters 80–112

Title

The Subtilisin-Like Serine Protease SDD1 Mediates Cell-to-Cell Signaling during Arabidopsis Stomatal Development

Uritza von Groll; Dieter Berger; Thomas Altmann The Plant Cell 2002. doi:10.1105/tpc.001016

Other claims from this paper (9)
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

CYCD4;1 is required for normal lateral root density, so density decreases without it.

Taxon
ArabidopsisArabidopsist0
Gene
CYCD4;1e2
Outcome
LR densitye2
Direction
decreaseinferrede2

Verbatim

t0

“modulates lateral root density in Arabidopsis”

✓ located verbatim in the source · title, characters 26–71
e2

“CYCD4;1 is expressed in meristematic pericycle protoxylem poles and is required for normal LR density”

✓ located verbatim in the source · abstract, characters 461–562

Title

The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region

Jeroen Nieuwland; Spencer Maughan; Walter Dewitte; et al. Proceedings of the National Academy of Sciences 2009. doi:10.1073/pnas.0906354106

Other claims from this paper (13)

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