Search claims · PlantClaims

Observationobservedoriginal resultmeasured

Claim · model-written summary

CRTG1 sequence identities range from 52 to 60%.

Taxon: coffeeCoffeat0
Gene: CRTG1e0
Outcome: sequence identitiese0
Value: 52 to 60%e0

Not reportedDirection

Verbatim

e0
“The sequence identities among the groups ranged from 52 to 60% for CRTG1”
✓ located verbatim in the source · abstract, characters 588–660

t0
“coffee”
✓ located verbatim in the source · title, characters 91–97

Title

Identification and chromosomal distribution of copia-like retrotransposon sequences in the coffee (Coffea L.) genome

Herrera, Juan Carlos; Camayo Velez, Gloria Cecilia; De la Torre, Gloria; et al. LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) 2013

Other claims from this paper (5)

Observation Coffee copia-like RT sequences form two distinct groups, CRTG1 and CRTG2.
Observation CRTG2 sequence identities range from 74 to 85%.
Observation Some CRTG1 clones are closely related to elements in other plant species.
Observation RT signals occur across C. arabica chromosomes in a dispersed pattern.
Observation Some chromosomal regions have higher RT-element concentrations.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Comparative sequence identities ranged from 33% to 71%.

Taxon: cropst0
Outcome: comparative identitiese0
Value: 33% to 71%e0

Verbatim

e0
“The comparative identities are from 33% to 71%.”
✓ located verbatim in the source · abstract, characters 580–627

t0
“Crops”
✓ located verbatim in the source · title, characters 78–83

Title

Identification and Phylogenetic Analysis of Potassium Channel Transporters in Crops

Liming Lu Xibei zhiwu xuebao 2009

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Sequence analysis identified identities and crucial motifs in potato CDPKs.

Taxon: potatoSolanum tuberosume0
Gene: CDPKse0
Outcome: sequence identities and crucial motifse0

Verbatim

e0
“A thorough sequence analysis revealed both sequence identities and crucial motifs in the potato CDPKs.”
✓ located verbatim in the source · abstract, characters 662–764

Title

Molecular cloning, expression and in silico analyses of calcium-dependent protein kinase 2 (CDPK2) in potato (Solanum tuberosum L.)

Gurpreet Kaur; Niranjan Das South African Journal of Botany 2022. doi:10.1016/j.sajb.2022.04.018

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Rice UAP2 and UAP1 have high sequence identities.

Taxon: RiceOryza sativae0
Gene: UAP2 and UAP1 proteinse0
Outcome: high sequence identitiese0

Verbatim

e0
“Rice UAP2 and UAP1 proteins present high sequence identities and very similar predicted 3D structures”
✓ located verbatim in the source · abstract, characters 734–835

Title

UDP-N-Acetylglucosamine Pyrophosphorylase 2 (UAP2) and 1 (UAP1) Perform Synergetic Functions for Leaf Survival in Rice

Zhaohai Wang; Qiang Wang; Lingxia Wei; et al. Frontiers in Plant Science 2021. doi:10.3389/fpls.2021.685102

Other claims from this paper (11)

Observation Lesion mimic spots and early senescence worsen over time in uap1 leaves.
Observation UAP proteins are evolutionarily conserved among eukaryotes.
Observation Many higher organisms, including rice, have UAP2 as well as UAP1.
Observation Rice UAP2 and UAP1 have similar predicted three dimensional structures.
Association UAP2 expression decreases as spots and senescence appear and worsen.
Observation UAP2 and UAP1 have highly similar enzymatic activity in UDP-GlcNAc biosynthesis.
Observation Both UAP proteins localized in the cytoplasm.
Intervention effect UAP2 overexpression rescued the uap1 leaf phenotype to normal.
Observation UAP2 expression is concentrated in young leaves.
Observation UAP1 expression is high across all leaf developmental stages.
Mechanism The authors infer that UAP2 and UAP1 act synergistically to protect rice leaves from early senescence.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Transcript levels depended on dTALE and STAP sequence identities.

Taxon: riceOryza sativat0
Gene: dTALE and STAP sequence identitiese0
Outcome: transgene transcript levelse0

Not reportedDirection

Verbatim

e0
“transgene transcript levels dependent on both dTALE and STAP sequence identities”
✓ located verbatim in the source · abstract, characters 878–958

t0
“rice”
✓ located verbatim in the source · title, characters 95–99

Title

A single promoter‐TALE system for tissue‐specific and tuneable expression of multiple genes in rice

Florence Danila; Tom Schreiber; Maria Ermakova; et al. Plant Biotechnology Journal 2022. doi:10.1111/pbi.13864

Other claims from this paper (5)

Method / resource Two dTALE-STAP systems activated reporter expression in stable transgenic rice.
Observation Relative STAP strength was consistent between dTALE systems.
Association Relative STAP strength differed among cell types.
Intervention effect dTALE expression activated endogenous genes off target.
Observation dTALE expression affected substantially fewer genes than somaclonal variation during regeneration.

Observationobservedoriginal resultmeasured

Claim · model-written summary

CRTG2 sequence identities range from 74 to 85%.

Taxon: coffeeCoffeat0
Gene: CRTG2e0
Outcome: sequence identitiese1
Value: 74 to 85%e0

Not reportedDirection

Verbatim

e0
“74 to 85% for CRTG2”
✓ located verbatim in the source · abstract, characters 665–684

t0
“coffee”
✓ located verbatim in the source · title, characters 91–97

e1
“The sequence identities among the groups ranged from 52 to 60% for CRTG1”
✓ located verbatim in the source · abstract, characters 588–660

Title

Identification and chromosomal distribution of copia-like retrotransposon sequences in the coffee (Coffea L.) genome

Herrera, Juan Carlos; Camayo Velez, Gloria Cecilia; De la Torre, Gloria; et al. LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas) 2013

Other claims from this paper (5)

Observation Coffee copia-like RT sequences form two distinct groups, CRTG1 and CRTG2.
Observation CRTG1 sequence identities range from 52 to 60%.
Observation Some CRTG1 clones are closely related to elements in other plant species.
Observation RT signals occur across C. arabica chromosomes in a dispersed pattern.
Observation Some chromosomal regions have higher RT-element concentrations.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Within-strain PVY genome sequence identities exceeded 98.5%.

Taxon: PotatoSolanum tuberosumt0
Outcome: sequence identitiese0
Value: >98.5%e0

Verbatim

e0
“sequence identities for isolates belonging to the same strain group were >98.5%”
✓ located verbatim in the source · abstract, characters 1244–1323

t0
“Potato virus Y in Potato Production Areas”
✓ located verbatim in the source · title, characters 21–62

Title

Genetic Diversity of Potato virus Y in Potato Production Areas in Northeast China

Yanju Bai; Shuxin Han; Yanling Gao; et al. Plant Disease 2018. doi:10.1094/pdis-04-18-0687-re

Other claims from this paper (19)

Observation PVY was detected in 38.4% of Heilongjiang potato samples.
Observation PVY was detected in 27.7% of Inner Mongolia potato samples.
Observation PVY NTN-NW -SYR-II occurred in 58.9% of typed samples.
Observation PVY N-Wi occurred in 47.5% of typed samples.
Observation PVY NTN-NW -SYR-I occurred in 31.0% of typed samples.
Observation PVY N:O occurred in 19.6% of typed samples.
Observation Eu-PVY NTN occurred in 7.6% of typed samples.
Observation NA-PVY N occurred in 1.3% of typed samples.
Observation PVY O occurred in 0.6% of typed samples.
Observation Among single-strain infections, PVY N-Wi accounted for 41.7%.
Observation Among single-strain infections, PVY NTN-NW -SYR-II accounted for 40.5%.
Observation Among single-strain infections, PVY NTN-NW -SYR-I accounted for 14.3%.
Observation Among single-strain infections, PVY N:O accounted for 3.6%.
Observation Among single-strain infections, Eu-PVY NTN accounted for 3.6%.
Observation Between-strain PVY genome sequence identities were 92.7–98.1%.
Observation Between-strain PVY polyprotein sequence identities were 96.1–98.4%.
Observation Recombination locations varied among PVY isolates within a strain group.
Observation Most Chinese PVY sequences clustered in recombinant groups.
Observation PVY NTN-NW -SYR-II caused the most severe symptoms on Kexin 13; both NTN-NW -SYR isolates caused tuber necrotic ringspots.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Six Okra06 ORFs had reported nucleotide sequence identities to CLCuMV.

Gene: Six ORFse0
Outcome: nucleotide sequence identitiese0
Comparator: CLCuMVe0

Not reportedTaxon

Verbatim

e0
“Six ORFs shared 100%,100%,99.6%,99.8%,100% and 99.7% nucleotide sequence identities with CLCuMV”
✓ located verbatim in the source · abstract, characters 580–675

Title

Molecular Characterization of Cotton leaf curl Multan virus and the Associated Satellite DNA Infecting Okra in Guangdong

Dong Di; Zhu YanHua; He ZiFu; et al. Journal of the South China Agricultural University 2012

Other claims from this paper (8)

Observation The virus from symptomatic okra belonged to Begomovirus in Geminiviridae.
Observation Okra06 had only a DNA-A component of 2 737 nucleotides encoding six potential ORFs.
Observation Okra06 DNA-A had 99.7% nucleotide sequence identity to CLCuMV.
Observation Okra06 was associated with satellite DNA β.
Observation Okra06 DNA β had 1 346 nucleotides and one potential ORF.
Observation Okra06 DNA β had 99.5% sequence identity to G6 DNA β.
Observation Phylogenetic analysis placed Okra06, G6 and Gx08 DNA β close together in a separate branch.
Observation The okra-infecting Okra06 isolate was identified as CLCuMV Hibiscus strain.

Observationobservedoriginal resultmeasured

Claim · model-written summary

WPMV isolates had nucleotide sequence identities of 80.9–99.8%.

Taxon: PepinoSolanum muricatumt0
Outcome: nucleotide sequence identitiese0
Value: 80.9–99.8%e0

Verbatim

e0
“The individual WPMV isolates displayed nucleotide sequence identities of 80.9–99.8%”
✓ located verbatim in the source · abstract, characters 1435–1518

t0
“Pepino (Solanum muricatum)”
✓ located verbatim in the source · title, characters 78–104

Title

Biological and Molecular Properties of Wild potato mosaic virus Isolates from Pepino (Solanum muricatum)

Cesar E. Fribourg; Adrian J. Gibbs; Ian P. Adams; et al. Plant Disease 2019. doi:10.1094/pdis-12-18-2164-re

Other claims from this paper (15)

Observation Older and newer pepino isolates were identified as WPMV.
Observation Infected solanaceous hosts varied in sensitivity and WPMV isolates varied in virulence.
Observation All seven new isolates quickly killed infected Nicotiana benthamiana plants.
Observation More than half of the new isolates killed Physalis floridana plants.
Observation More than half of the new isolates killed S. chancayense plants.
Observation N. benthamiana, P. floridana and S. chancayense were most sensitive to infection.
Observation BA was most virulent, killing five of eight solanaceous host species.
Observation CA was least severe, killing only N. benthamiana.
Method / resource Complete genomic sequences were obtained for six isolates.
Observation Isolate FE showed evidence of recombination.
Association Phylogenetic and geographic distances among WPMV isolates were unrelated.
Observation PVV was around 75% identical to WPMV.
Observation WPMV, PVV and Peru tomato virus formed similar diversity clusters and were distinct related Potato virus Y lineage members.
Observation WPMV infection appears widespread and economically important to coastal Peru pepino producers.
Recommendation The authors advocate healthy pepino stock programs.

Observationobservedoriginal resultmeasured

Claim · model-written summary

19 bands (21.8%) contained both homologous and nonhomologous amplicons, with sequence identities below 60%.

Taxon: garlicAllium sativumt0
Outcome: contained both homologous and nonhomologous ampliconse4
Value: 19 (21.8%)e4
Qualifier: sequence identities less than 60%e4

Verbatim

t0
“garlic (Allium sativum L.)”
✓ located verbatim in the source · title, characters 49–75

e4
“19 (21.8%) contained both homologous and nonhomologous amplicons, with sequence identities less than 60%”
✓ located verbatim in the source · abstract, characters 967–1071

Title

Sequence homology of polymorphic AFLP markers in garlic (Allium sativum L.)

Meryem Ipek; Ahmet Ipek; Philipp W. Simon Genome 2006. doi:10.1139/g06-092

Other claims from this paper (6)

“sequence identities”

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