Search claims · PlantClaims

Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcript and protein abundance differed.

Outcome: discrepancies between transcript and protein abundancee0

Not reportedTaxon

Verbatim

e0
“discrepancies between transcript and protein abundance”
✓ located verbatim in the source · abstract, characters 306–360

Title

OmicIntegrator: A Simple and Versatile Tool for Meta-Analysis

Iván Federico Berco Gitman; Cecilia Eugenia María Grossi; Denise Soledad Arico; et al. Plants 2026. doi:10.3390/plants15020334

Other claims from this paper (5)

Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

TcMADS transcript abundance details were supplied.

Taxon: Theobroma cacaoTheobroma cacaot0
Gene: TcMADS genese0
Outcome: transcript abundancee0
Value: transcript abundancee0

Verbatim

e0
“The details of transcript abundance of TcMADS genes”
✓ located verbatim in the source · abstract, characters 392–443

t0
“Theobroma cacao”
✓ located verbatim in the source · title, characters 71–86

Title

Genome-Wide Identification and Analysis of the MADS-Box Gene Family in Theobroma cacao

Qianqian Zhang Zenodo (CERN European Organization for Nuclear Research) 2021. doi:10.5281/zenodo.5565606

Other claims from this paper (3)

Method / resource MADS-box gene sequences identified in cacao were supplied as a supplementary resource.
Method / resource Sequence logs of ten conserved motifs in cacao were supplied.
Method / resource Predicted cis-regulatory elements in TcMADS promoters were supplied.

Associationobservedoriginal resultmeasured

Claim · model-written summary

In antisense leaves, Rubisco content is a function of RbcS transcript abundance but not of rbcL transcript abundance.

Taxon: tobaccoNicotiana tabacume0
Gene: RbcSe5
Outcome: Rubisco contente5

Not reportedDirection

Verbatim

e0
“tobacco (Nicotiana tabacum) leaf development”
✓ located verbatim in the source · abstract, characters 321–365

e5
“Rubisco content is a function of RbcS, but not rbcL, transcript abundance”
✓ located verbatim in the source · abstract, characters 1002–1075

Title

Regulation of Photosynthesis during Leaf Development in RbcS Antisense DNA Mutants of Tobacco

C. Z. Jiang; S. R. Rodermel PLANT PHYSIOLOGY 1995. doi:10.1104/pp.107.1.215

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

All GmKRPs had transcript abundance.

Outcome: all GmKRPs exhibited transcript abundancee0

Not reportedTaxon

Verbatim

e0
“all GmKRPs exhibited transcript abundance”
✓ located verbatim in the source · abstract, characters 826–867

Title

Characterization of the soybean KRP gene family reveals a key role for GmKRP2a in root development

Binhui Guo; Lin Chen; Lu Dong; et al. Frontiers in Plant Science 2023. doi:10.3389/fpls.2023.1096467

Other claims from this paper (11)

Observation Nine GmKRP genes were identified in the Glycine max genome.
Observation Soybean KRP proteins localized to the nucleus.
Observation The C-terminal protein sequence was highly conserved.
Observation Several GmKRPs showed tissue specific expression.
Observation Promoters were abundant in light, cold, anaerobic and hormone cis elements.
Observation Coexpressed genes were mainly involved in RNA synthesis and modification.
Observation Coexpressed genes were mainly involved in energy metabolism.
Observation GmKRP2a localized to the nucleus.
Mechanism GmKRP2a participates in root development through cell cycle regulation.
Mechanism RNA sequencing implicated GmKRP2a in cell cycle regulation via ribosome regulation and cell expansion.
Mechanism RNA sequencing implicated GmKRP2a in hormone and stress response pathways.

Mechanismobservedoriginal resultmeasured

Claim · model-written summary

CsROS1b increased CsATG6 transcript abundance.

Taxon: cucumberCucumis sativust0
Gene: CsATG6e0
Outcome: CsATG6 transcript abundancee0
Direction: increasede0

Verbatim

e0
“increased CsATG6 transcript abundance”
✓ located verbatim in the source · abstract, characters 1417–1454

t0
“cucumber”
✓ located verbatim in the source · title, characters 100–108

Title

CsROS1b regulates autophagy through inducing hypomethylation of CsATG6 to enhance salt tolerance in cucumber

Guangling Chen; Xinyang Chen; Jingjing He; et al. PLANT PHYSIOLOGY 2025. doi:10.1093/plphys/kiaf579

Other claims from this paper (19)

Observation The salt-sensitive cultivar accumulated more ubiquitinated proteins than the tolerant cultivar under salt stress.
Observation The salt-sensitive cultivar had lower autophagic activity than the tolerant cultivar under salt stress.
Intervention effect Salt stress induced CG hypomethylation in the CsATG6 coding sequence.
Association Salt-induced CsATG6 hypomethylation coincided with gene upregulation.
Association Salt-induced CsATG6 hypomethylation coincided with autophagy activation.
Intervention effect 5-Aza induced hypomethylation of the CsATG6 coding sequence.
Intervention effect 5-Aza induced transcriptional upregulation of CsATG6.
Intervention effect 5-Aza treatment increased autophagic activity.
Intervention effect 5-Aza treatment decreased accumulation of ubiquitinated proteins.
Intervention effect Silencing CsATG6 decreased autophagic activity.
Intervention effect Silencing CsATG6 decreased salt tolerance.
Intervention effect Overexpressing CsATG6 enhanced autophagic activity.
Intervention effect Overexpressing CsATG6 enhanced salt tolerance.
Intervention effect Loss of CsATG6 function compromised 5-Aza-induced autophagic activity.
Intervention effect Loss of CsATG6 function compromised 5-Aza-induced salt tolerance.
Intervention effect Salt stress and 5-Aza jointly induced CsROS1b expression.
Mechanism CsROS1b demethylated CsATG6 at CG sites.
Mechanism CsROS1b activity enhanced autophagosome formation.
Mechanism CsROS1b activity reduced ubiquitinated protein accumulation.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Pa×gGolSII transcript abundance varied seasonally.

Taxon: hybrid poplarPopulust0
Gene: Pa×gGolSIIe0
Outcome: transcript abundancee0
Direction: variede0

Verbatim

e0
“the Pa×gGolSII transcript abundance varied seasonally”
✓ located verbatim in the source · abstract, characters 899–952

t0
“hybrid poplar”
✓ located verbatim in the source · title, characters 67–80

Title

Evaluating the role of the raffinose family of oligosaccharides in hybrid poplar

Unda, Faride cIRcle (University of British Columbia) 2012. doi:10.14288/1.0073250

Other claims from this paper (19)

Association Phylogenetic comparisons suggest Populus Go1S may have a stress-response role.
Observation Protein analysis verified that the two expressed isoforms are Go1S.
Association Pa×gGolSI had a broader pH and temperature range than Pa×gGolSII.
Mechanism The authors infer Pa×gGolSI may support basic metabolism.
Mechanism The authors infer Pa×gGolSII likely participates in seasonal carbohydrate mobilization.
Intervention effect Two AtGolS3 over-expression lines showed growth effects.
Observation Other over-expression lines had marginal cell-wall changes.
Intervention effect Extreme over-expressers were severely stunted.
Observation Extreme over-expressers developed tension-wood traits.
Intervention effect AtGolS3-OE lines had reduced microfibril angle.
Intervention effect AtGolS3-OE lines had increased cell-wall crystallinity.
Intervention effect AtGolS3-OE lines had higher cellulose content.
Intervention effect AtGolS3-OE lines had lower mannose content.
Intervention effect AtGolS3-OE lines had lower lignin content.
Intervention effect Galactinol and raffinose contents increased dramatically in the transgenic lines.
Intervention effect The lines were not more tolerant to abiotic stress under the tested conditions.
Mechanism The authors propose that GolS over-expression and galactinol signal tension-wood formation.
Intervention effect RFS over-expression increased biomass.
Intervention effect RFS over-expression increased total cellulose content.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Tomato fruit transcript abundance was less coordinated by functional group than metabolite abundance.

Taxon: TomatoSolanum lycopersicume1
Organ / stage: fruite1
Outcome: transcript abundancee0
Direction: less strictly coordinatede0
Comparator: metabolite abundancee0

Verbatim

e0
“transcript abundance was less strictly coordinated by functional group than metabolite abundance”
✓ located verbatim in the source · abstract, characters 1605–1701

e1
“Tomato fruit development”
✓ located verbatim in the source · abstract, characters 96–120

Title

Integrated Analysis of Metabolite and Transcript Levels Reveals the Metabolic Shifts That Underlie Tomato Fruit Development and Highlight Regulatory Aspects of Metabolic Network Behavior

Fernando Carrari; Charles Baxter; Björn Usadel; et al. PLANT PHYSIOLOGY 2006. doi:10.1104/pp.106.088534

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

PsMDH transcript abundance was highest in carpels.

Taxon: Tree PeonyPaeonia suffruticosat0
Organ / stage: carpelse0
Gene: PsMDHe0
Outcome: transcript abundancee0
Direction: higheste0

Verbatim

e0
“PsMDH showed the highest transcript abundance in carpels”
✓ located verbatim in the source · abstract, characters 571–627

t0
“Tree Peony”
✓ located verbatim in the source · title, characters 60–70

Title

Cloning,Expression and Vector Construction of PsMDH Gene in Tree Peony

Peng ZhenHua Acta Agriculturae Boreali-Sinica 2011

Other claims from this paper (9)

Observation A full-length PsMDH cDNA was obtained from tree peony petals.
Observation PsMDH cDNA is 1 283 bp long.
Observation PsMDH has an 80 bp 5′-UTR.
Observation PsMDH has a 203 bp 3′-UTR.
Observation PsMDH has a 999 bp ORF.
Observation The PsMDH ORF encodes 332 predicted amino acids.
Observation PsMDH shared more than 93.37% homology with Populus trichocarpa.
Observation PsMDH transcript abundance was lowest in stamens.
Method / resource A plant expression vector was constructed for tree peony variety improvement.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Protein and transcript abundance were poorly correlated in tomato fruit.

Taxon: tomatoSolanum lycopersicume0 e1
Outcome: protein and transcript abundancee0
Direction: poorly correlatede0

Verbatim

e0
“protein and transcript abundance were poorly correlated”
✓ located verbatim in the source · abstract, characters 472–527

e1
“developing tomato (Solanum lycopersicum) fruit”
✓ located verbatim in the source · abstract, characters 231–277

Title

Modeling Protein Destiny in Developing Fruit

Isma Belouah; Christine Nazaret; Pierre Pétriacq; et al. PLANT PHYSIOLOGY 2019. doi:10.1104/pp.19.00086

Other claims from this paper (8)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Active gibberellins regulated GA4 transcript abundance with dose.

Gene: GA4e0
Compound: active GAse0
Outcome: GA4 transcript abundancee0
Qualifier: dose-dependent mannere0

Not reportedTaxonDirection

Verbatim

e0
“active GAs regulate GA4 transcript abundance in a dose-dependent manner”
✓ located verbatim in the source · abstract, characters 448–519

Title

Gibberellin Dose-Response Regulation of GA4 Gene Transcript Levels in Arabidopsis1

Rachel J. Cowling; Yuji Kamiya; Hideharu Seto; et al. PLANT PHYSIOLOGY 1998. doi:10.1104/pp.117.4.1195

Other claims from this paper (5)

Intervention effect GA4 down-regulated GA4 transcript abundance.
Intervention effect GA9 did not down-regulate GA4 transcript abundance.
Association Gibberellins promoting hypocotyl elongation also regulated GA4 transcripts.
Observation Non-3beta-hydroxylated structures with an electronegative C-3 group exhibited these activities.
Observation GA control of GA4 transcripts was disrupted in gai and spy-5.

“transcript abundance”

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