By organism › Bacteria › Yersiniaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

Serratia surfactantfaciens showed a cellulase zone of 23.0±2.82 mm in the quantitative enzyme screening.

Taxon: S . surfactantfaciensSerratia surfactantfaciense0
Outcome: zonee0
Value: 23.0±2.82 mme0
Qualifier: cellulasee0

Verbatim

e0
“S . surfactantfaciens showed a zone of 23.0±2.82 mm for cellulase”
✓ located verbatim in the source · abstract, characters 781–846

Title

Antifungal potential of non-ribosomal peptide producing Serratia surfactantfaciens (S31) and Alcaligenes pakistanensis (S33) isolated from the Solanum lycopersicum rhizosphere

Aetsam Bin Masood; Malik Badshah; Muhammad Ishtiaq Ali; et al. Physiological and Molecular Plant Pathology 2025. doi:10.1016/j.pmpp.2025.102778

Other claims from this paper (4)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Sequencing identified potent isolates as Serratia surfactantfaciens.

Taxon: Serratia surfactantfaciensSerratia surfactantfaciense0
Outcome: identified using 16S rDNA sequencinge0

Verbatim

e0
“All potent silica-solubilizing plant growth-promoting rhizobacterial isolates were identified using 16S rDNA sequencing and belongs to Enterobacter sp., Serratia surfactantfaciens , and Klebsiella sp.”
✓ located verbatim in the source · abstract, characters 1928–2128

Title

Bioprospecting of novel silica solubilizing bacteria as bioinoculants for sustainable silica management

Elina Maharjan; Sonam Mahawar; Surya Chauhan; et al. Frontiers in Microbiology 2025. doi:10.3389/fmicb.2025.1556406

Other claims from this paper (12)

Observation All 24 SiS-RB isolates formed silica solubilization clear zones with indices of 1.05–3.40 cm.
Observation Quantitative solubilized silica ranged from 1.29–43.29 ppm.
Observation The 24 SiS-RB isolates demonstrated plant growth promoting activities.
Observation Only six isolates significantly solubilized the tested minerals.
Intervention effect The six potent isolates considerably enhanced maize development in vitro.
Intervention effect The potent isolates improved maize catalase, superoxide dismutase, and peroxidase activities.
Intervention effect The potent isolates improved maize polyphenol oxidase and phenylalanine ammonia lyase activities.
Observation ARDRA revealed considerable genetic diversity among SiS-RB isolates.
Observation The bacterial dendrogram had similarity indices from 0.11 to 0.90, averaging 0.51.
Observation Sequencing identified potent isolates as Enterobacter sp.
Observation Sequencing identified potent isolates as Klebsiella sp.
Recommendation The authors propose the isolates for Si biofertilizer development to promote plants in Si deficient soils.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The NMS01 genome lacked human pathogenic genes.

Taxon: S. marcescens NMS01Serratia marcescense0
Outcome: absence of human pathogenic genese0

Verbatim

e0
“Genome analysis confirmed the absence of human pathogenic genes in S. marcescens NMS01, underscoring its safety and suitability as a biocontrol.”
✓ located verbatim in the source · abstract, characters 923–1067

Title

Genomic insights and antiviral immunity mediated by Serratia marcescens (NMS01) reveal the potential to manage Orthotospovirus arachinecrosis (groundnut bud necrosis virus) in cowpea and tomato

R. Sharanya; M. Gayathri; P. Renukadevi; et al. Journal of Agriculture and Food Research 2025. doi:10.1016/j.jafr.2025.102386

Other claims from this paper (15)

Intervention effect Biohardening followed by NMS01 foliar application delayed tomato symptom onset.
Intervention effect NMS01 treatment significantly reduced tomato disease incidence.
Intervention effect NMS01 reduced viral titer in cowpea to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 reduced tomato viral titer to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 significantly reduced GBNV symptoms in cowpea.
Intervention effect Treated tomato plants had a lower N gene copy number of 1.5 × 10 5 versus 2.4 × 10 6 in controls.
Intervention effect NMS01 upregulated MAPKK1, WRKY33B, and PR1 in tomato.
Observation AntiSMASH predicted genes for prodigiosin, thiopeptide, and hserlactone production.
Observation NMS01 has 4,023 core genes.
Observation NMS01 has 352 dispensable genes.
Observation NMS01 has 664 unique genes, including MAMP genes.
Intervention effect NMS01-treated field tomato plants reached 133.7 cm height versus 104.73 cm in controls.
Intervention effect NMS01-treated field tomato plants had more flowers, 26.57 per plant versus 11.17 in controls.
Intervention effect NMS01-treated field tomato plants had lower disease incidence of 12.3% versus 30.1% in controls.
Recommendation The authors identify NMS01 as a promising biocontrol for GBNV management and tomato productivity.

Observationobservedoriginal resultsimulated

Claim · model-written summary

AntiSMASH predicted genes for prodigiosin, thiopeptide, and hserlactone production.

Taxon: S. marcescens NMS01Serratia marcescense1
Outcome: genes involved in the production of NRPS derived metabolitese0
Qualifier: prodigiosin, thiopeptide, and hserlactonee0

Verbatim

e0
“AntiSMASH predictions identified genes involved in the production of NRPS derived metabolites, including prodigiosin, thiopeptide, and hserlactone”
✓ located verbatim in the source · abstract, characters 1068–1214

e1
“Genome analysis confirmed the absence of human pathogenic genes in S. marcescens NMS01”
✓ located verbatim in the source · abstract, characters 923–1009

Title

Genomic insights and antiviral immunity mediated by Serratia marcescens (NMS01) reveal the potential to manage Orthotospovirus arachinecrosis (groundnut bud necrosis virus) in cowpea and tomato

R. Sharanya; M. Gayathri; P. Renukadevi; et al. Journal of Agriculture and Food Research 2025. doi:10.1016/j.jafr.2025.102386

Other claims from this paper (15)

Intervention effect Biohardening followed by NMS01 foliar application delayed tomato symptom onset.
Intervention effect NMS01 treatment significantly reduced tomato disease incidence.
Intervention effect NMS01 reduced viral titer in cowpea to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 reduced tomato viral titer to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 significantly reduced GBNV symptoms in cowpea.
Intervention effect Treated tomato plants had a lower N gene copy number of 1.5 × 10 5 versus 2.4 × 10 6 in controls.
Intervention effect NMS01 upregulated MAPKK1, WRKY33B, and PR1 in tomato.
Observation The NMS01 genome lacked human pathogenic genes.
Observation NMS01 has 4,023 core genes.
Observation NMS01 has 352 dispensable genes.
Observation NMS01 has 664 unique genes, including MAMP genes.
Intervention effect NMS01-treated field tomato plants reached 133.7 cm height versus 104.73 cm in controls.
Intervention effect NMS01-treated field tomato plants had more flowers, 26.57 per plant versus 11.17 in controls.
Intervention effect NMS01-treated field tomato plants had lower disease incidence of 12.3% versus 30.1% in controls.
Recommendation The authors identify NMS01 as a promising biocontrol for GBNV management and tomato productivity.

Observationobservedoriginal resultmeasured

Claim · model-written summary

NMS01 has 4,023 core genes.

Taxon: S. marcescens NMS01Serratia marcescense1
Outcome: core genese0
Value: 4,023e0

Not reportedDirection

Verbatim

e0
“Pan-genome analysis revealed that NMS01 harbors 4,023 core genes, 352 dispensable genes, and 664 unique genes, including MAMP genes.”
✓ located verbatim in the source · abstract, characters 1287–1419

e1
“Genome analysis confirmed the absence of human pathogenic genes in S. marcescens NMS01”
✓ located verbatim in the source · abstract, characters 923–1009

Title

Genomic insights and antiviral immunity mediated by Serratia marcescens (NMS01) reveal the potential to manage Orthotospovirus arachinecrosis (groundnut bud necrosis virus) in cowpea and tomato

R. Sharanya; M. Gayathri; P. Renukadevi; et al. Journal of Agriculture and Food Research 2025. doi:10.1016/j.jafr.2025.102386

Other claims from this paper (15)

Intervention effect Biohardening followed by NMS01 foliar application delayed tomato symptom onset.
Intervention effect NMS01 treatment significantly reduced tomato disease incidence.
Intervention effect NMS01 reduced viral titer in cowpea to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 reduced tomato viral titer to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 significantly reduced GBNV symptoms in cowpea.
Intervention effect Treated tomato plants had a lower N gene copy number of 1.5 × 10 5 versus 2.4 × 10 6 in controls.
Intervention effect NMS01 upregulated MAPKK1, WRKY33B, and PR1 in tomato.
Observation The NMS01 genome lacked human pathogenic genes.
Observation AntiSMASH predicted genes for prodigiosin, thiopeptide, and hserlactone production.
Observation NMS01 has 352 dispensable genes.
Observation NMS01 has 664 unique genes, including MAMP genes.
Intervention effect NMS01-treated field tomato plants reached 133.7 cm height versus 104.73 cm in controls.
Intervention effect NMS01-treated field tomato plants had more flowers, 26.57 per plant versus 11.17 in controls.
Intervention effect NMS01-treated field tomato plants had lower disease incidence of 12.3% versus 30.1% in controls.
Recommendation The authors identify NMS01 as a promising biocontrol for GBNV management and tomato productivity.

Observationobservedoriginal resultmeasured

Claim · model-written summary

NMS01 has 352 dispensable genes.

Taxon: S. marcescens NMS01Serratia marcescense1
Outcome: dispensable genese0
Value: 352e0

Not reportedDirection

Verbatim

e0
“Pan-genome analysis revealed that NMS01 harbors 4,023 core genes, 352 dispensable genes, and 664 unique genes, including MAMP genes.”
✓ located verbatim in the source · abstract, characters 1287–1419

e1
“Genome analysis confirmed the absence of human pathogenic genes in S. marcescens NMS01”
✓ located verbatim in the source · abstract, characters 923–1009

Title

Genomic insights and antiviral immunity mediated by Serratia marcescens (NMS01) reveal the potential to manage Orthotospovirus arachinecrosis (groundnut bud necrosis virus) in cowpea and tomato

R. Sharanya; M. Gayathri; P. Renukadevi; et al. Journal of Agriculture and Food Research 2025. doi:10.1016/j.jafr.2025.102386

Other claims from this paper (15)

Intervention effect Biohardening followed by NMS01 foliar application delayed tomato symptom onset.
Intervention effect NMS01 treatment significantly reduced tomato disease incidence.
Intervention effect NMS01 reduced viral titer in cowpea to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 reduced tomato viral titer to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 significantly reduced GBNV symptoms in cowpea.
Intervention effect Treated tomato plants had a lower N gene copy number of 1.5 × 10 5 versus 2.4 × 10 6 in controls.
Intervention effect NMS01 upregulated MAPKK1, WRKY33B, and PR1 in tomato.
Observation The NMS01 genome lacked human pathogenic genes.
Observation AntiSMASH predicted genes for prodigiosin, thiopeptide, and hserlactone production.
Observation NMS01 has 4,023 core genes.
Observation NMS01 has 664 unique genes, including MAMP genes.
Intervention effect NMS01-treated field tomato plants reached 133.7 cm height versus 104.73 cm in controls.
Intervention effect NMS01-treated field tomato plants had more flowers, 26.57 per plant versus 11.17 in controls.
Intervention effect NMS01-treated field tomato plants had lower disease incidence of 12.3% versus 30.1% in controls.
Recommendation The authors identify NMS01 as a promising biocontrol for GBNV management and tomato productivity.

Observationobservedoriginal resultmeasured

Claim · model-written summary

NMS01 has 664 unique genes, including MAMP genes.

Taxon: S. marcescens NMS01Serratia marcescense1
Outcome: unique genese0
Value: 664e0
Qualifier: including MAMP genese0

Not reportedDirection

Verbatim

e0
“Pan-genome analysis revealed that NMS01 harbors 4,023 core genes, 352 dispensable genes, and 664 unique genes, including MAMP genes.”
✓ located verbatim in the source · abstract, characters 1287–1419

e1
“Genome analysis confirmed the absence of human pathogenic genes in S. marcescens NMS01”
✓ located verbatim in the source · abstract, characters 923–1009

Title

Genomic insights and antiviral immunity mediated by Serratia marcescens (NMS01) reveal the potential to manage Orthotospovirus arachinecrosis (groundnut bud necrosis virus) in cowpea and tomato

R. Sharanya; M. Gayathri; P. Renukadevi; et al. Journal of Agriculture and Food Research 2025. doi:10.1016/j.jafr.2025.102386

Other claims from this paper (15)

Intervention effect Biohardening followed by NMS01 foliar application delayed tomato symptom onset.
Intervention effect NMS01 treatment significantly reduced tomato disease incidence.
Intervention effect NMS01 reduced viral titer in cowpea to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 reduced tomato viral titer to DAC-ELISA OD values of 0.32–0.96 versus 3.26 in controls.
Intervention effect NMS01 significantly reduced GBNV symptoms in cowpea.
Intervention effect Treated tomato plants had a lower N gene copy number of 1.5 × 10 5 versus 2.4 × 10 6 in controls.
Intervention effect NMS01 upregulated MAPKK1, WRKY33B, and PR1 in tomato.
Observation The NMS01 genome lacked human pathogenic genes.
Observation AntiSMASH predicted genes for prodigiosin, thiopeptide, and hserlactone production.
Observation NMS01 has 4,023 core genes.
Observation NMS01 has 352 dispensable genes.
Intervention effect NMS01-treated field tomato plants reached 133.7 cm height versus 104.73 cm in controls.
Intervention effect NMS01-treated field tomato plants had more flowers, 26.57 per plant versus 11.17 in controls.
Intervention effect NMS01-treated field tomato plants had lower disease incidence of 12.3% versus 30.1% in controls.
Recommendation The authors identify NMS01 as a promising biocontrol for GBNV management and tomato productivity.

Observationobservedoriginal resultmeasured

Claim · model-written summary

In vitro, the OK482790 strain produced lytic enzymes, antimicrobial compounds, ammonia, nitrite and nitrate.

Taxon: Serratia marcescensSerratia marcescenst0
Outcome: production of different lytic enzymese0

Not reportedSetting

Verbatim

t0
“Serratia marcescens OK482790”
✓ located verbatim in the source · title, characters 154–182

e0
“production of different lytic enzymes (protease, lipase, cellulase, and catalase), antimicrobial compounds (hydrogen cyanide, and siderophores), ammonia, nitrite, and nitrate”
✓ located verbatim in the source · abstract, characters 586–760

Title

Characterization and genomics identification of key genes involved in denitrification-DNRA-nitrification pathway of plant growth-promoting rhizobacteria (Serratia marcescens OK482790)

Marwa A. Hamada; Elham R. S. Soliman BMC Microbiology 2023. doi:10.1186/s12866-023-02941-7

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The genome of OK482790 contains nitrite and nitrate genes encoding the sensor proteins NarK, NarQ and NarX.

Taxon: Serratia marcescensSerratia marcescenst0
Gene: NarK, NarQ and NarXe0
Outcome: presence of nitrite and nitrate genese0

Verbatim

t0
“Serratia marcescens OK482790”
✓ located verbatim in the source · title, characters 154–182

e0
“The genome screening indicated the presence of nitrite and nitrate genes encoding Nar membrane bound sensor proteins (NarK, NarQ and NarX)”
✓ located verbatim in the source · abstract, characters 922–1060

Title

Characterization and genomics identification of key genes involved in denitrification-DNRA-nitrification pathway of plant growth-promoting rhizobacteria (Serratia marcescens OK482790)

Marwa A. Hamada; Elham R. S. Soliman BMC Microbiology 2023. doi:10.1186/s12866-023-02941-7

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The OK482790 genome also contains nitrate and nitrite reductase genes.

Taxon: Serratia marcescensSerratia marcescenst0
Gene: NarI, NarJ, NarH, NarG and NapC/NirTe0
Outcome: Nitrate and nitrite reductase encoding genese0

Verbatim

t0
“Serratia marcescens OK482790”
✓ located verbatim in the source · title, characters 154–182

e0
“Nitrate and nitrite reductase encoding genes (NarI, NarJ, NarH, NarG and NapC/NirT) and (NirB, NirC, and NirD) are also found”
✓ located verbatim in the source · abstract, characters 1062–1187

Title

Characterization and genomics identification of key genes involved in denitrification-DNRA-nitrification pathway of plant growth-promoting rhizobacteria (Serratia marcescens OK482790)

Marwa A. Hamada; Elham R. S. Soliman BMC Microbiology 2023. doi:10.1186/s12866-023-02941-7

Other claims from this paper (3)

Yersiniaceae 27 claims

27 claims