By organism › Green plants › Pinaceae › Pinus tropicalis

Method / resourceobservedoriginal resultpositivebasis n/a

Claim · model-written summary

De novo pine transcriptomes were assembled for investigation of NLR and PR genes.

Taxon: tropical pinesPinus tropicalist0
Material: Pinus oocarpa, Pinus maximinoi and Pinus greggiie1
Gene: NLR and PR genee0
Outcome: De novo transcriptomese0

Not reportedComparatorValue

Verbatim

e0
“De novo transcriptomes were assembled and used to investigate the NLR and PR gene content within available pine references.”
✓ located verbatim in the source · abstract, characters 650–773

t0
“tropical pines”
✓ located verbatim in the source · title, characters 78–92

e1
“Pinus oocarpa, Pinus maximinoi and Pinus greggii”
✓ located verbatim in the source · abstract, characters 600–648

Title

Multispecies comparison of host responses to Fusarium circinatum challenge in tropical pines show consistency in resistance mechanisms

Erik A. Visser; Tamanique P. Kampmann; Jill L. Wegrzyn; et al. Plant Cell & Environment 2022. doi:10.1111/pce.14522

Other claims from this paper (3)

Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Induced salicylate, jasmonate and ethylene signalling crosstalk was implicated in pine resistance and compromised in susceptible hosts.

Taxon: tropical pinesPinus tropicalist0
Interactor: F. circinatumFusarium circinatume1pathogen
Outcome: host resistancee0
Qualifier: crosstalk between induced salicylate, jasmonate and ethylene signallinge0

Verbatim

e0
“Expression results indicated crosstalk between induced salicylate, jasmonate and ethylene signalling is involved in host resistance and compromised in susceptible hosts.”
✓ located verbatim in the source · abstract, characters 1015–1184

t0
“tropical pines”
✓ located verbatim in the source · title, characters 78–92

e1
“F. circinatum inoculated and mock-inoculated”
✓ located verbatim in the source · abstract, characters 429–473

Title

Multispecies comparison of host responses to Fusarium circinatum challenge in tropical pines show consistency in resistance mechanisms

Erik A. Visser; Tamanique P. Kampmann; Jill L. Wegrzyn; et al. Plant Cell & Environment 2022. doi:10.1111/pce.14522

Other claims from this paper (3)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Resistant pines had higher constitutive expression of sulfur metabolism and flavonoid biosynthesis.

Taxon: tropical pinesPinus tropicalist0
Interactor: F. circinatumFusarium circinatume1pathogen
Outcome: constitutive expression of sulfur metabolism and flavonoid biosynthesise0
Direction: highere0
Comparator: resistant hostse0

Verbatim

e0
“Additionally, higher constitutive expression of sulfur metabolism and flavonoid biosynthesis in resistant hosts suggest involvement of these metabolites in resistance.”
✓ located verbatim in the source · abstract, characters 1185–1352

t0
“tropical pines”
✓ located verbatim in the source · title, characters 78–92

e1
“F. circinatum inoculated and mock-inoculated”
✓ located verbatim in the source · abstract, characters 429–473

Title

Multispecies comparison of host responses to Fusarium circinatum challenge in tropical pines show consistency in resistance mechanisms

Erik A. Visser; Tamanique P. Kampmann; Jill L. Wegrzyn; et al. Plant Cell & Environment 2022. doi:10.1111/pce.14522

Other claims from this paper (3)

Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors suggest sulfur and flavonoid metabolites contribute to pine resistance.

Taxon: tropical pinesPinus tropicalist0
Interactor: F. circinatumFusarium circinatume1pathogen
Compound: these metabolitese0
Outcome: resistancee0
Qualifier: sulfur metabolism and flavonoid biosynthesise0

Verbatim

e0
“Additionally, higher constitutive expression of sulfur metabolism and flavonoid biosynthesis in resistant hosts suggest involvement of these metabolites in resistance.”
✓ located verbatim in the source · abstract, characters 1185–1352

t0
“tropical pines”
✓ located verbatim in the source · title, characters 78–92

e1
“F. circinatum inoculated and mock-inoculated”
✓ located verbatim in the source · abstract, characters 429–473

Title

Multispecies comparison of host responses to Fusarium circinatum challenge in tropical pines show consistency in resistance mechanisms

Erik A. Visser; Tamanique P. Kampmann; Jill L. Wegrzyn; et al. Plant Cell & Environment 2022. doi:10.1111/pce.14522

Other claims from this paper (3)

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Soils with accumulated leaf litter in Pinus tropicalis stands had significantly higher phosphorus than soils without leaf litter, an increase higher than 4.9 %.

Taxon: Pinus tropicalis MoreletPinus tropicalist0
Treatment: accumulation of leaf littere1
Outcome: phosphoruse1
Direction: increasese1
Value: 4.9 %e1
Comparator: without leaf littere1

Verbatim

t0
“Pinus tropicalis Morelet”
✓ located verbatim in the source · title, characters 65–89

e1
“significant differences between soils with and without leaf litter, more accentuated in phosphorus and organic matter, with increases higher than 4.9 % and 3.9 % as a consequence of the accumulation of leaf litter”
✓ located verbatim in the source · abstract, characters 666–879

Title

Leaf litter accumulation and release of nutrients to the soil in Pinus tropicalis Morelet stands

Darien Miranda Pérez; Katiuska Ravelo Pimentel; Pedro Alejandro Vigil García; et al. DOAJ (DOAJ: Directory of Open Access Journals) 2021

Other claims from this paper (2)

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Soils with accumulated leaf litter in Pinus tropicalis stands had significantly higher organic matter than soils without leaf litter, an increase higher than 3.9 %.

Taxon: Pinus tropicalis MoreletPinus tropicalist0
Treatment: accumulation of leaf littere1
Outcome: organic mattere1
Direction: increasese1
Value: 3.9 %e1
Comparator: without leaf littere1

Verbatim

t0
“Pinus tropicalis Morelet”
✓ located verbatim in the source · title, characters 65–89

e1
“significant differences between soils with and without leaf litter, more accentuated in phosphorus and organic matter, with increases higher than 4.9 % and 3.9 % as a consequence of the accumulation of leaf litter”
✓ located verbatim in the source · abstract, characters 666–879

Title

Leaf litter accumulation and release of nutrients to the soil in Pinus tropicalis Morelet stands

Darien Miranda Pérez; Katiuska Ravelo Pimentel; Pedro Alejandro Vigil García; et al. DOAJ (DOAJ: Directory of Open Access Journals) 2021

Other claims from this paper (2)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The highest contribution of nutrients and organic matter occurred at the soil surface and decreased appreciably in soils from the pits made in the stands.

Taxon: Pinus tropicalis MoreletPinus tropicalist0
Outcome: highest contribution of nutrients and organic mattere1

Verbatim

t0
“Pinus tropicalis Morelet”
✓ located verbatim in the source · title, characters 65–89

e1
“the highest contribution of nutrients and organic matter is produced in the surface of the soil and decreases, appreciably in the soils extracted from the soil pits made in the stands”
✓ located verbatim in the source · abstract, characters 890–1073

Title

Leaf litter accumulation and release of nutrients to the soil in Pinus tropicalis Morelet stands

Darien Miranda Pérez; Katiuska Ravelo Pimentel; Pedro Alejandro Vigil García; et al. DOAJ (DOAJ: Directory of Open Access Journals) 2021

Other claims from this paper (2)

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

RNA sequencing generated 1.3 million candidate Affymetrix SNP probe sets.

Taxon: tropical pine tree speciesPinus tropicalist0
Outcome: candidate Affymetrix SNP probe setse0
Value: 1.3 millione0

Verbatim

t0
“tropical pine tree species”
✓ located verbatim in the source · title, characters 42–68

e0
“resulting in 1.3 million candidate Affymetrix SNP probe sets”
✓ located verbatim in the source · abstract, characters 264–324

Title

A genome‐wide SNP genotyping resource for tropical pine tree species

Colin Jackson; Nanette Christie; Sharon Melissa Reynolds; et al. Molecular Ecology Resources 2021. doi:10.1111/1755-0998.13484

Other claims from this paper (13)

Method / resource Capture sequencing generated 563 K candidate SNP probe sets.
Method / resource The screening array tiled 300 K RNA-seq-derived SNP probe sets.
Method / resource The screening array tiled 120 K capture-seq-derived SNP probe sets.
Method / resource A 420 K screening array genotyped 576 trees.
Method / resource A 50 K SNP array was selected for commercial production.
Method / resource 20 K polymorphic SNPs were selected for P. patula, P. tecunumanii, P. oocarpa and P. caribaea.
Method / resource 15 K polymorphic SNPs were selected for P. greggii and P. maximinoi.
Method / resource 13 K polymorphic SNPs were selected for P. elliottii.
Method / resource 8K polymorphic SNPs were selected for P. pseudostrobus.
Method / resource The array included 9.7 K ancestry-informative SNPs for species and hybrid discrimination.
Method / resource One quarter of the 50 K SNP markers were polymorphic in only one species.
Method / resource Three quarters of the 50 K SNP markers were shared by at least two species.
Method / resource The authors expect the Pitro50K chip to support population genomics and molecular breeding.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Capture sequencing generated 563 K candidate SNP probe sets.

Taxon: tropical pine tree speciesPinus tropicalist0
Outcome: candidate SNP probe setse0
Value: 563 Ke0

Verbatim

t0
“tropical pine tree species”
✓ located verbatim in the source · title, characters 42–68

e0
“resulting in 563 K candidate SNP probe sets”
✓ located verbatim in the source · abstract, characters 519–562

Title

A genome‐wide SNP genotyping resource for tropical pine tree species

Colin Jackson; Nanette Christie; Sharon Melissa Reynolds; et al. Molecular Ecology Resources 2021. doi:10.1111/1755-0998.13484

Other claims from this paper (13)

Method / resource RNA sequencing generated 1.3 million candidate Affymetrix SNP probe sets.
Method / resource The screening array tiled 300 K RNA-seq-derived SNP probe sets.
Method / resource The screening array tiled 120 K capture-seq-derived SNP probe sets.
Method / resource A 420 K screening array genotyped 576 trees.
Method / resource A 50 K SNP array was selected for commercial production.
Method / resource 20 K polymorphic SNPs were selected for P. patula, P. tecunumanii, P. oocarpa and P. caribaea.
Method / resource 15 K polymorphic SNPs were selected for P. greggii and P. maximinoi.
Method / resource 13 K polymorphic SNPs were selected for P. elliottii.
Method / resource 8K polymorphic SNPs were selected for P. pseudostrobus.
Method / resource The array included 9.7 K ancestry-informative SNPs for species and hybrid discrimination.
Method / resource One quarter of the 50 K SNP markers were polymorphic in only one species.
Method / resource Three quarters of the 50 K SNP markers were shared by at least two species.
Method / resource The authors expect the Pitro50K chip to support population genomics and molecular breeding.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

The screening array tiled 300 K RNA-seq-derived SNP probe sets.

Taxon: tropical pine tree speciesPinus tropicalist0
Outcome: RNA-seq (72%)e0
Value: 300 Ke0

Verbatim

t0
“tropical pine tree species”
✓ located verbatim in the source · title, characters 42–68

e0
“300 K RNA-seq (72%) and 120 K capture-seq (28%) derived SNP probe sets were tiled on a 420 K screening array”
✓ located verbatim in the source · abstract, characters 576–684

Title

A genome‐wide SNP genotyping resource for tropical pine tree species

Colin Jackson; Nanette Christie; Sharon Melissa Reynolds; et al. Molecular Ecology Resources 2021. doi:10.1111/1755-0998.13484

Other claims from this paper (13)

Method / resource RNA sequencing generated 1.3 million candidate Affymetrix SNP probe sets.
Method / resource Capture sequencing generated 563 K candidate SNP probe sets.
Method / resource The screening array tiled 120 K capture-seq-derived SNP probe sets.
Method / resource A 420 K screening array genotyped 576 trees.
Method / resource A 50 K SNP array was selected for commercial production.
Method / resource 20 K polymorphic SNPs were selected for P. patula, P. tecunumanii, P. oocarpa and P. caribaea.
Method / resource 15 K polymorphic SNPs were selected for P. greggii and P. maximinoi.
Method / resource 13 K polymorphic SNPs were selected for P. elliottii.
Method / resource 8K polymorphic SNPs were selected for P. pseudostrobus.
Method / resource The array included 9.7 K ancestry-informative SNPs for species and hybrid discrimination.
Method / resource One quarter of the 50 K SNP markers were polymorphic in only one species.
Method / resource Three quarters of the 50 K SNP markers were shared by at least two species.
Method / resource The authors expect the Pitro50K chip to support population genomics and molecular breeding.

Pinus tropicalis 52 claims

52 claims