Paper · 2007 · Journal of Experimental Botany

Reproductive development and phenotypic differences in garlic are associated with expression and splicing of LEAFY homologue gaLFY

N. Rotem; E. Shemesh; Y. Peretz; et al.

9
claims
18
verbatim quotes
41
citations
3
research areas
—
Not open access

Abstract

Modern garlic (Allium sativum L.) cultivars are sterile and propagated only vegetatively. The recent discovery of fertile genotypes in Central Asia and the restoration of flowering and fertility by environmental manipulations open the way for in-depth florogenetic, genetic, and molecular research in garlic. In the present work, two bolting garlic accessions were employed: #3026, developing normal flowers and seeds, and #2509, in which flowers abort at the early stages of development. Morphological studies showed transition of the apical meristems from the vegetative to the reproductive stage and inflorescence initiation in both genotypes. Low temperatures promote transition of the apex and stem elongation, but have no effect on the phenotypic expression of the inflorescence development. The initial stages of reproductive development in non-flowering #2509 plants were followed by abortion of floral primordia at the differentiation stage. A search for genes involved in the control of flowering in garlic resulted in identification of the garlic LEAFY/FLO homologue, gaLFY. Further comparative analyses of gene expression revealed two gaLFY transcripts, differing in 64 nucleotides, with clear splicing borders. The short variant transcript was identified in both genotypes throughout all development stages, whereas the long variant appears in the flowering genotype #3026 only during reproductive development. The phenotypic differences in garlic, with regard to flowering, may be associated with the efficacy of the splicing process.

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Claims 9

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Both garlic genotypes transitioned from vegetative to reproductive apices and initiated inflorescences.

Taxon
garlicAllium sativume1
Outcome
transition of the apical meristems from the vegetative to the reproductive stage and inflorescence initiatione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Morphological studies showed transition of the apical meristems from the vegetative to the reproductive stage and inflorescence initiation in both genotypes.”

✓ located verbatim in the source · abstract, characters 489–646 · show in text ↑
e1

“two bolting garlic accessions”

✓ located verbatim in the source · abstract, characters 330–359 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low temperatures promoted garlic apex transition and stem elongation.

Taxon
garlicAllium sativume1
Treatment
Low temperaturese0
Outcome
transition of the apex and stem elongatione0
Direction
promotee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Low temperatures promote transition of the apex and stem elongation”

✓ located verbatim in the source · abstract, characters 647–714 · show in text ↑
e1

“two bolting garlic accessions”

✓ located verbatim in the source · abstract, characters 330–359 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Low temperatures had no effect on garlic inflorescence phenotype.

Taxon
garlicAllium sativume1
Treatment
Low temperaturese0
Outcome
phenotypic expression of the inflorescence developmente0
Direction
no effecte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Low temperatures promote transition of the apex and stem elongation, but have no effect on the phenotypic expression of the inflorescence development.”

✓ located verbatim in the source · abstract, characters 647–797 · show in text ↑
e1

“two bolting garlic accessions”

✓ located verbatim in the source · abstract, characters 330–359 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Floral primordia in nonflowering accession #2509 aborted at differentiation.

Taxon
garlicAllium sativume1
Material
#2509e0
Organ / stage
differentiation stagee0
Outcome
abortion of floral primordiae0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The initial stages of reproductive development in non-flowering #2509 plants were followed by abortion of floral primordia at the differentiation stage.”

✓ located verbatim in the source · abstract, characters 798–950 · show in text ↑
e1

“garlic accessions”

✓ located verbatim in the source · abstract, characters 342–359 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The garlic LEAFY/FLO homologue gaLFY was identified.

Taxon
garlicAllium sativume0
Gene
gaLFYe0
Outcome
identification of the garlic LEAFY/FLO homologue, gaLFYe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“identification of the garlic LEAFY/FLO homologue, gaLFY”

✓ located verbatim in the source · abstract, characters 1029–1084 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two gaLFY transcripts with a 64 nucleotide difference and clear splicing borders were found.

Taxon
garlicAllium sativume1
Gene
gaLFYe0
Outcome
two gaLFY transcriptse0
Value
64 nucleotidese0
Qualifier
clear splicing borderse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“two gaLFY transcripts, differing in 64 nucleotides, with clear splicing borders”

✓ located verbatim in the source · abstract, characters 1143–1222 · show in text ↑
e1

“garlic LEAFY/FLO homologue”

✓ located verbatim in the source · abstract, characters 1051–1077 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The short gaLFY transcript occurred in both genotypes throughout development.

Taxon
garlicAllium sativume2
Gene
gaLFYe1
Outcome
short variant transcript was identified in both genotypes throughout all development stagese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The short variant transcript was identified in both genotypes throughout all development stages”

✓ located verbatim in the source · abstract, characters 1224–1319 · show in text ↑
e1

“two gaLFY transcripts”

✓ located verbatim in the source · abstract, characters 1143–1164 · show in text ↑
e2

“garlic LEAFY/FLO homologue”

✓ located verbatim in the source · abstract, characters 1051–1077 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The long gaLFY transcript occurred only in flowering #3026 during reproductive development.

Taxon
garlicAllium sativume2
Material
#3026e0
Organ / stage
reproductive developmente0
Gene
gaLFYe1
Outcome
long variant appearse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the long variant appears in the flowering genotype #3026 only during reproductive development”

✓ located verbatim in the source · abstract, characters 1329–1422 · show in text ↑
e1

“two gaLFY transcripts”

✓ located verbatim in the source · abstract, characters 1143–1164 · show in text ↑
e2

“garlic LEAFY/FLO homologue”

✓ located verbatim in the source · abstract, characters 1051–1077 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Flowering differences in garlic may be associated with splicing efficacy.

Taxon
garlicAllium sativume0
Organ / stage
floweringe0
Outcome
phenotypic differences in garlic, with regard to floweringe0
Qualifier
may be associated with the efficacy of the splicing processe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Allium sativum
Allium sativum · TaxonIvar Leidus · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The phenotypic differences in garlic, with regard to flowering, may be associated with the efficacy of the splicing process.”

✓ located verbatim in the source · abstract, characters 1424–1548 · show in text ↑

cold · molecular: expression · Allium sativum (garlic)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

cold · growth · Allium sativum (garlic)Positive and negative results

14 papers: 12 positive, 2 negative or no effect

11 papers in the same direction as this paper · 2 in the opposite direction

  1. no effect
  2. negative
  3. positive

10 papers more in this group

See all 14 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.