Paper · 2023 · PLoS Genetics

An atypical NLR protein modulates the NRC immune receptor network in Nicotiana benthamiana

Hiroaki Adachi; Toshiyuki Sakai; Adeline Harant; et al.

8
claims
14
verbatim quotes
40
citations
3
research areas
✓
Open access · cc-by

Abstract

The NRC immune receptor network has evolved in asterid plants from a pair of linked genes into a genetically dispersed and phylogenetically structured network of sensor and helper NLR (nucleotide-binding domain and leucine-rich repeat-containing) proteins. In some species, such as the model plant Nicotiana benthamiana and other Solanaceae, the NRC (NLR-REQUIRED FOR CELL DEATH) network forms up to half of the NLRome, and NRCs are scattered throughout the genome in gene clusters of varying complexities. Here, we describe NRCX, an atypical member of the NRC family that lacks canonical features of these NLR helper proteins, such as a functional N-terminal MADA motif and the capacity to trigger autoimmunity. In contrast to other NRCs, systemic gene silencing of NRCX in N. benthamiana markedly impairs plant growth resulting in a dwarf phenotype. Remarkably, dwarfism of NRCX silenced plants is partially dependent on NRCX paralogs NRC2 and NRC3, but not NRC4. Despite its negative impact on plant growth when silenced systemically, spot gene silencing of NRCX in mature N. benthamiana leaves doesn't result in visible cell death phenotypes. However, alteration of NRCX expression modulates the hypersensitive response mediated by NRC2 and NRC3 in a manner consistent with a negative role for NRCX in the NRC network. We conclude that NRCX is an atypical member of the NRC network that has evolved to contribute to the homeostasis of this genetically unlinked NLR network.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

NRCX lacks a functional N-terminal MADA motif and capacity to trigger autoimmunity.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Gene
NRCXe0
Outcome
lacks canonical features of these NLR helper proteinse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“NRCX, an atypical member of the NRC family that lacks canonical features of these NLR helper proteins, such as a functional N-terminal MADA motif and the capacity to trigger autoimmunity”

✓ located verbatim in the source · abstract, characters 525–711 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 69–90 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Systemic NRCX silencing markedly impairs growth and produces dwarf plants.

Taxon
N. benthamianaNicotiana benthamianae0
Treatment
systemic gene silencing of NRCXe0
Gene
NRCXe0
Outcome
plant growthe0
Direction
impairse0
Qualifier
dwarf phenotypee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“systemic gene silencing of NRCX in N. benthamiana markedly impairs plant growth resulting in a dwarf phenotype”

✓ located verbatim in the source · abstract, characters 740–850 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

NRC2 and NRC3 partially determine dwarfism following NRCX silencing.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Gene
NRC2 and NRC3e0
Outcome
dwarfisme0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“dwarfism of NRCX silenced plants is partially dependent on NRCX paralogs NRC2 and NRC3, but not NRC4”

✓ located verbatim in the source · abstract, characters 864–964 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 69–90 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

NRC4 does not contribute to dwarfism following NRCX silencing.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Gene
NRC4e0
Outcome
dwarfisme0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“dwarfism of NRCX silenced plants is partially dependent on NRCX paralogs NRC2 and NRC3, but not NRC4”

✓ located verbatim in the source · abstract, characters 864–964 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 69–90 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Spot NRCX silencing in mature leaves did not yield visible cell death.

Taxon
N. benthamianaNicotiana benthamianae0
Organ / stage
mature N. benthamiana leavese0
Treatment
spot gene silencing of NRCXe0
Gene
NRCXe0
Outcome
visible cell death phenotypese0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“spot gene silencing of NRCX in mature N. benthamiana leaves doesn't result in visible cell death phenotypes”

✓ located verbatim in the source · abstract, characters 1038–1145 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Altered NRCX expression modulates NRC2-mediated hypersensitive response.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Gene
NRCXe0
Outcome
hypersensitive response mediated by NRC2e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“alteration of NRCX expression modulates the hypersensitive response mediated by NRC2 and NRC3”

✓ located verbatim in the source · abstract, characters 1156–1249 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 69–90 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Altered NRCX expression modulates NRC3-mediated hypersensitive response.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Gene
NRCXe0
Outcome
hypersensitive response mediated by NRC2 and NRC3e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“alteration of NRCX expression modulates the hypersensitive response mediated by NRC2 and NRC3”

✓ located verbatim in the source · abstract, characters 1156–1249 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 69–90 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer NRCX has a negative regulatory role in the NRC network.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Gene
NRCXe0
Outcome
NRC networke0
Qualifier
negative rolee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“a negative role for NRCX in the NRC network”

✓ located verbatim in the source · abstract, characters 1278–1321 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 69–90 · show in text ↑

loss of function · growth · Nicotiana benthamianaPositive and negative results

21 papers: 4 positive, 17 negative or no effect

16 papers in the same direction as this paper · 4 in the opposite direction

  1. positive
  2. positive
  3. positive

17 papers more in this group

See all 21 papers →

loss of function · cytology · Nicotiana benthamianaPositive and negative results

33 papers: 9 positive, 24 negative or no effect

23 papers in the same direction as this paper · 9 in the opposite direction

  1. positive
  2. positive
  3. positive

29 papers more in this group

See all 33 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.