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Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

H2S at the stated concentration lowered root Sultr1;2 expression.

Organ / stage
roote0e1e2e3e4
Treatment
concentrations =0.25 µL L-1e0e1e2e3e4
Gene
Sultr1;2e0e1e2e3e4
Outcome
expression of Sultr1;2e0e1e2e3e4
Direction
decreasede0e1e2e3e4
Comparator
ample sulfate supplye0e1e2e3e4

Verbatim

e0

“at concentrations =0.25 µL L-1 a decreased expression of Sultr1;2 in the root”

✓ located verbatim in the source · abstract, characters 569–646
e1

“At an ample sulfate supply, H2S exposure of Chinese cabbage resulted in a partial decrease of the sulfate uptake capacity”

✓ located verbatim in the source · abstract, characters 442–563
e2

“Upon sulfate deprivation there was a more than 3-fold increase in the sulfate uptake capacity of the root”

✓ located verbatim in the source · abstract, characters 678–783
e3

“Expression of APR was strongly enhanced in the root and shoot of sulfate-deprived plants”

✓ located verbatim in the source · abstract, characters 1194–1282
e4

“a decreased expression of Sultr1;2 in the root and APR in the root and shoot”

✓ located verbatim in the source · abstract, characters 600–676
t0

“Chinese cabbage”

✓ located verbatim in the source · title, characters 113–128

Title

Regulation of sulfate uptake, expression of the sulfate transporters Sultr1;1 and Sultr1;2, and APS reductase in Chinese cabbage (Brassica pekinensis) as affected by atmospheric H2S nutrition and sulfate deprivation

Aleksandra Koralewska; C. Elisabeth E. Stuiver; Freek S. Posthumus; et al. Functional Plant Biology 2008. doi:10.1071/fp07283

Other claims from this paper (13)
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Expression of OsVPE2 and OsVPE3 changed opposite to brassinosteroid levels in rice panicles.

Gene
OsVPE2 and OsVPE3e1
Compound
BRse2
Outcome
expression levelse1
Direction
decreaseinferrede1

Verbatim

e1

“whereas the hydrogen peroxide (H2O2) content, vacuolar processing enzyme genes (OsVPE2 and OsVPE3) expression levels and the degree of nuclear DNA fragmentation showed the opposite trend”

✓ located verbatim in the source · abstract, characters 781–967
e2

“Changes in the levels of adenosine triphosphate (ATP), energy charge, activities of enzymes involved in energy metabolism, including cytochrome C oxidase (CCO) and succinate dehydrogenase (SDH), and total antioxidant capacity (T-AOC) were consistent with those in BRs levels”

✓ located verbatim in the source · abstract, characters 505–779
e3

“A field-grown rice cultivar was exposed to three soil moisture treatments during meiosis”

✓ located verbatim in the source · abstract, characters 164–252

Title

Brassinosteroids mediate the effect of soil-drying during meiosis on spikelet degeneration in rice

Weiyang Zhang; Jiayan Sheng; Lidong Fu; et al. Environmental and Experimental Botany 2019. doi:10.1016/j.envexpbot.2019.103887

Other claims from this paper (17)
Associationobservedoriginal resultmeasured

Claim · model-written summary

In well-watered plants, the time of increase in PEPCase mRNA depended on soil volume, and larger pots led to later increases.

Taxon
Mesembryanthemum crystallinumMesembryanthemum crystallinume0
Treatment
soil volumee1
Outcome
time of increase in the steady-state level of PEPCase mRNAe1
Direction
latere2

Verbatim

e0

“The abundance of mRNA specific for phosphoenolpyruvate carboxylase (PEPCase) was measured in leaves from well-watered plants of Mesembryanthemum crystallinum”

✓ located verbatim in the source · abstract, characters 0–157
e1

“The time of increase in the steady-state level of PEPCase mRNA in well-watered plants was dependent on soil volume”

✓ located verbatim in the source · abstract, characters 264–378
e2

“The larger the pot, the later PEPCase transcripts were increased”

✓ located verbatim in the source · abstract, characters 380–444

Title

Induction of mRNA for Phosphoenolpyruvate Carboxylase Is Correlated with a Decrease in Shoot Water Content in Well-Irrigated Mesembryanthemum crystallinum

Jürgen M. Schmitt; Mechtild Piepenbrock PLANT PHYSIOLOGY 1992. doi:10.1104/pp.99.2.759

Other claims from this paper (3)
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Inactivating FAD3A and FAD3B mutations increase LIO content.

Gene
FAD3A and FAD3Be0
Outcome
LIO contente0
Direction
increasee0

Verbatim

e0

“Inactivating mutations in the FAD3A and FAD3B genes lead to a decrease in the LIN content and an increase in the LIO content”

✓ located verbatim in the source · abstract, characters 285–409
t0

“Development and Complex Application of Methods for the Identification of Mutations in the FAD3A and FAD3B Genes Resulting in the Reduced Content of Linolenic Acid in Flax Oil”

✓ located verbatim in the source · title, characters 0–174
e1

“three approaches were proposed: (1) targeted deep sequencing, (2) high resolution melting (HRM) analysis, (3) cleaved amplified polymorphic sequences (CAPS) markers”

✓ located verbatim in the source · abstract, characters 721–885

Title

Development and Complex Application of Methods for the Identification of Mutations in the FAD3A and FAD3B Genes Resulting in the Reduced Content of Linolenic Acid in Flax Oil

Liubov V. Povkhova; Elena N. Pushkova; Tatiana A. Rozhmina; et al. Plants 2022. doi:10.3390/plants12010095

Other claims from this paper (5)
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Sulfate deprivation strongly enhanced root and shoot APR expression.

Organ / stage
root and shoote0e1e2e3e4
Treatment
sulfate-deprivede0e1e2e3e4
Gene
APRe0e1e2e3e4
Outcome
Expression of APRe0e1e2e3e4
Direction
strongly enhancede0e1e2e3e4
Comparator
ample sulfate supplye0e1e2e3e4

Verbatim

e0

“Expression of APR was strongly enhanced in the root and shoot of sulfate-deprived plants”

✓ located verbatim in the source · abstract, characters 1194–1282
e1

“At an ample sulfate supply, H2S exposure of Chinese cabbage resulted in a partial decrease of the sulfate uptake capacity”

✓ located verbatim in the source · abstract, characters 442–563
e2

“Upon sulfate deprivation there was a more than 3-fold increase in the sulfate uptake capacity of the root”

✓ located verbatim in the source · abstract, characters 678–783
e3

“Expression of APR was strongly enhanced in the root and shoot of sulfate-deprived plants”

✓ located verbatim in the source · abstract, characters 1194–1282
e4

“a decreased expression of Sultr1;2 in the root and APR in the root and shoot”

✓ located verbatim in the source · abstract, characters 600–676
t0

“Chinese cabbage”

✓ located verbatim in the source · title, characters 113–128

Title

Regulation of sulfate uptake, expression of the sulfate transporters Sultr1;1 and Sultr1;2, and APS reductase in Chinese cabbage (Brassica pekinensis) as affected by atmospheric H2S nutrition and sulfate deprivation

Aleksandra Koralewska; C. Elisabeth E. Stuiver; Freek S. Posthumus; et al. Functional Plant Biology 2008. doi:10.1071/fp07283

Other claims from this paper (13)
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SCW-Ghcesas knockout mutants had substantially reduced micronaire, by 35.41%–37.37% below WT for the Ghcesa7-2At/Dt mutant with the strongest decline.

Taxon
Gossypium hirsutumGossypium hirsutume3
Material
Ghcesa7-2At/Dte5
Treatment
nonconservative knockout of SCW-GhCesAse2
Outcome
micronairee5
Direction
reducede5
Value
35.41%–37.37%e5
Comparator
WTe5

Verbatim

e3

“Upland cotton (Gossypium hirsutum)”

✓ located verbatim in the source · abstract, characters 0–34
e2

“CRISPR/Cas9-mediated nonconservative knockout of SCW-GhCesAs led to cotton with longer, stronger and finer fibre”

✓ located verbatim in the source · abstract, characters 6035–6147
e5

“micronaire values were substantially reduced in mutants, with Ghcesa7-2At/Dt showing the strongest decline (3.59 ± 1.09), equivalent to a 35.41%–37.37% decrease compared to WT (5.62 ± 0.09)”

✓ located verbatim in the source · abstract, characters 4278–4467

Title

CRISPR /Cas9‐Mediated Specific Knockout of GhCesA4 /7/8 Improves Cotton Fibre Quality

Lu Qiao; Haozhe Tan; Zhengxiu Ye; et al. Plant Biotechnology Journal 2025. doi:10.1111/pbi.70467

Other claims from this paper (6)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Nitrate metabolism-related gene expression was upregulated only in the fur1/fur2 double deletion mutant under Fe2+-rich conditions.

Material
double deletion mutante4
Interactor
Ralstonia pseudosolanacearumRalstonia pseudosolanacearumt0pathogen
Outcome
nitrate metabolism-related gene expression levelse4
Direction
upregulatede4
Qualifier
onlye4

Verbatim

e1

“Virulence assays involving tomato plants revealed that single deletions ( fur1 or fur2 ) moderately decreased virulence, whereas the double deletion ( fur1 and fur2 ) resulted in a significant decrease in virulence”

✓ located verbatim in the source · abstract, characters 1136–1350
e4

“Additionally, nitrate metabolism-related gene expression levels were upregulated only in the fur1 ⁄ fur2 double deletion mutant under Fe 2+ -rich conditions”

✓ located verbatim in the source · abstract, characters 889–1045
t0

“Ralstonia pseudosolanacearum strain OE1-1”

✓ located verbatim in the source · title, characters 40–81

Title

Two ferric uptake regulator proteins in Ralstonia pseudosolanacearum strain OE1-1 function cooperatively in response to the extracellular iron level under ferrous iron-rich conditions

Sora Tateda; Yuki Terazawa; Akinori Kiba; et al. Applied and Environmental Microbiology 2026. doi:10.1128/aem.02276-25

Other claims from this paper (6)
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Bacillus siamensis treatment enhanced expression of their corresponding genes in litchi fruit.

Taxon
litchi fruitLitchie0
Treatment
Bacillus siamensis (N-1)e1
Interactor
Bacillus siamensis (N-1)Bacillus siamensise1biocontrol_agent
Outcome
expression of their corresponding genese0
Direction
enhancede0

Not reportedComparator

Verbatim

e0

“There was also an increase in the energy status of litchi fruit due to the enhanced activity of Ca2+-ATPase, H+-ATPase, oxidase (CCO), cytochrome C, and succinic dehydrogenase (SDH), as well as the expression of their corresponding genes.”

✓ located verbatim in the source · abstract, characters 982–1220
t0

“Bacillus siamensis”

✓ located verbatim in the source · title, characters 122–140
e1

“Results indicated that litchi fruit treated with Bacillus siamensis (N-1) exhibited a significant improvement in storability as evidenced by a decrease in the rate of the browning index (BI), color change, rate of weight loss, and laccase (LAC) and polyphenol oxidase (PPO) activity.”

✓ located verbatim in the source · abstract, characters 698–981

Title

LcVHA2 and LcVHA3 positively modulate energy metabolism and reduce pericarp browning in litchi fruit after application of Bacillus siamensis

Xin Wang; Muhammad Muzammal Aslam; Nanpu Cheng; et al. Biological Control 2023. doi:10.1016/j.biocontrol.2023.105430

Other claims from this paper (19)
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

With 2,4-D and AzaC combined, methylation in the 101X458 accession increased after 30 days, to 39.5, 36.2 and 41.6 %.

Taxon
Acca sellowianaFeijoa sellowianae0
Material
101X458 accessione1
Treatment
2,4-D and AzaC combinede1
Outcome
global methylation levelse1
Direction
increasee1
Value
39.5, 36.2 and 41.6 %e1
Qualifier
after 30 dayse1

Not reportedComparator

Verbatim

e0

“The present work evaluated the effects of 5-azacytidine (AzaC) and 2,4-dichlorophenoxyacetic acid (2,4-D) on Acca sellowiana somatic embryogenesis (SE)”

✓ located verbatim in the source · abstract, characters 174–325
e1

“In treatment with 2,4-D and AzaC combined, the 85 accession showed increasing global methylation levels. Otherwise, the 101X458 accession, in the same treatment, showed a decrease between 10 and 20 days, followed by an increase after 30 days (39.5, 36.2 and 41.6 %)”

✓ located verbatim in the source · abstract, characters 914–1179

Title

5-Azacytidine combined with 2,4-D improves somatic embryogenesis of Acca sellowiana (O. Berg) Burret by means of changes in global DNA methylation levels Hugo P. F. FragaLeila N. VieiraClarissa A. CaprestanoDouglas A. Steinmacher • Gustavo A. MickeDaniel A. SpudeitRosete PescadorMiguel P. Guerra

Douglas André Steinmacher; A. Spudeit 2012

Other claims from this paper (9)
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Hyperpolarized PpPINA variants with mutated phosphorylation sites markedly delayed reprogramming.

Taxon
Physcomitrium patensPhyscomitrium patense1
Treatment
hyperpolarized PpPINA variants carrying mutated phosphorylation sitese0
Gene
PpPINAe0
Outcome
reprogramminge0
Direction
delaye0
Comparator
endogenous or nonpolar versionse0

Verbatim

e0

“Physcomitrium patens, a bryophyte known for its remarkable cell reprogramming capacity. We used various approaches to manipulate auxin levels, including exogenous application, pharmacological manipulations, and auxin biosynthesis mutants. We observed no significant effect on the rate of cell reprogramming. Rather, our analysis of auxin dynamics revealed a decrease in auxin levels upon excision, which was followed by …” Show full quote

✓ located verbatim in the source · abstract, characters 216–1085
e1

“Physcomitrium patens”

✓ located verbatim in the source · abstract, characters 216–236

Title

Auxin fluctuation and PIN polarization in moss leaf cell reprogramming

Han Tang; Li-Hang Chen; Jiří Friml Plant and Cell Physiology 2025. doi:10.1093/pcp/pcaf008

Other claims from this paper (5)

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