Search claims · PlantClaims

Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors.

Outcome: database of plant cis- acting regulatory elementse0

Not reportedTaxonComparatorValue

Verbatim

e0
“PlantCARE is a database of plant cis- acting regulatory elements, enhancers and repressors”
✓ located verbatim in the source · abstract, characters 0–90

Title

PlantCARE, a plant cis-acting regulatory element database

S. Rombauts; P. Dehais; M. Van Montagu; et al. Nucleic Acids Research 1999. doi:10.1093/nar/27.1.295

Other claims from this paper (1)

Method / resource PlantCARE provides matrices, consensus and individual site sequences for regulatory sites on particular genes.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The PPO promoter contained multiple cis-acting elements

Outcome: cis-acting elementse0

Not reportedTaxon

Verbatim

e0
“It contained a variety of cis-acting elements”
✓ located verbatim in the source · abstract, characters 649–694

Title

Cloning and function analysis of the promoter of PPO gene from litchi(Litchi chinensis Sonn.)

Shu‐Ju Wang Guoshu xuebao 2015

Other claims from this paper (3)

Mechanismauthor interpretationreview summarybasis n/a

Claim · model-written summary

Transcription factors interact with cis-acting promoter elements.

Taxon: plantt0
Gene: Transcription factore0
Outcome: interacts with cis-acting promoter elementse0

Not reportedDirection

Verbatim

e0
“Transcription factor, also called trans-acting factor, interacts with cis-acting promoter elements”
✓ located verbatim in the source · abstract, characters 138–236

t0
“plant”
✓ located after whitespace/quote normalisation · title, characters 47–52

Title

Progresses on Transcription Factors Related to Plant Stress-Tolerance

Xin-Hua SANG; Zhong-Yi WU; Cong-Lin HUANG; et al. 植物学通报 2004. doi:10.3724/cbb-t23-189

Other claims from this paper (2)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Core module components contained auxin cis-acting elements.

Outcome: auxin cis-acting elementse0

Not reportedTaxon

Verbatim

e0
“all core components of this module contain auxin cis-acting elements”
✓ located verbatim in the source · abstract, characters 897–965

Title

Auxin-induced AsARF16 complex orchestrates lncRNA125175-mediated ceRNA networks to regulate garlic somatic embryogenesis

Yunhe Bai; Jiaojiao Ruan; Fangling Jiang; et al. Horticulture Research 2026. doi:10.1093/hr/uhag016

Other claims from this paper (7)

Mechanism lncRNA125175 sequestered AsmiR393h and attenuated cleavage of AsTIR1.
Intervention effect Exogenous auxin induced lncRNA125175 promoter activity.
Intervention effect Exogenous auxin induced AsTIR1 promoter activity.
Observation Coexpression analysis identified AsARF16 as an upstream regulator.
Observation AsARF16 bound the lncRNA125175 promoter.
Observation AsARF16 interacted with AsWRKY31.
Observation AsARF16 interacted with AsIAA33.

Mechanismauthor interpretationreview summarybasis n/a

Claim · model-written summary

CBF specifically binds promoters with CRT/DRE cis-acting elements.

Taxon: Plantt0
Gene: CRT/ DRE cis-acting elementse0
Outcome: bound to the promoters containing CRT/ DRE cis-acting elementse0

Verbatim

e0
“which specifically bound to the promoters containing CRT/ DRE cis-acting elements”
✓ located verbatim in the source · abstract, characters 156–237

t0
“Plant”
✓ located verbatim in the source · title, characters 40–45

Title

Role of the Transcription Factor CBF in Plant Cold Resistance

Haipeng Liu Heilongjiang nongye kexue 2009

Other claims from this paper (4)

Mechanism Low temperature induces CBF transcription factor expression.
Mechanism CBF activates COR gene expression.
Mechanism CBF activity enhances cold resistance.
Recommendation The authors suggest CBF gene introduction as a route for stress-resistance breeding.

Observationobservedoriginal resultsimulated

Claim · model-written summary

The promoter was predicted to contain 107 cis-acting elements.

Taxon: SoybeanGlycine maxt0
Outcome: cis-acting elements in the promotere0
Value: 107 cis-acting elementse0

Verbatim

e0
“There were 107 cis-acting elements in the promoter predicted by online software Plant CARE and PLACE.”
✓ located verbatim in the source · abstract, characters 274–375

t0
“Soybean”
✓ located verbatim in the source · title, characters 64–71

Title

Cloning and Functional Analysis of a Promoter of GmPLP1 Gene in Soybean

LI Yong-guan Dadou kexue 2014

Other claims from this paper (5)

Observation A 1.5 kb upstream fragment of GmPLP1 was isolated from soybean cultivar Dongnong L13.
Intervention effect The GmPLP1 promoter increased GUS activity under dark conditions.
Intervention effect The GmPLP1 promoter increased GUS activity under blue light.
Intervention effect The GmPLP1 promoter increased GUS activity under gibberellin A3.
Intervention effect The GmPLP1 promoter increased GUS activity under abscisic acid.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Cis-acting elements differed among genes.

Taxon: Gossypium hirsutumGossypium hirsutumt0
Outcome: cis- acting elementse0
Direction: Differencese0

Verbatim

e0
“Differences were found in cis- acting elements among genes.”
✓ located verbatim in the source · abstract, characters 1515–1574

t0
“Gossypium hirsutum”
✓ located verbatim in the source · title, characters 86–104

Title

Genome-Wide Analysis of the Cytochrome P450 Gene Family Involved in Salt Tolerance in Gossypium hirsutum

Kangtai Sun; Hui Fang; Yu Chen; et al. Frontiers in Plant Science 2021. doi:10.3389/fpls.2021.685054

Other claims from this paper (8)

Observation The 156 P450 genes encoded proteins of molecular weights 5,949.6–245,576.3 Da.
Observation Encoded amino acid lengths ranged from 51 to 2,144.
Observation P450 proteins grouped into four subfamilies.
Observation Cotton P450 genes ranged from 1,500 to 13,000 bp.
Observation P450 exon counts ranged from 1 to 9.
Observation P450 intron counts ranged from 0 to 8.
Observation Promoter analysis identified 31 cis-acting elements.
Association qRT-PCR agreed with earlier transcriptome results, implicating P450 genes in salt tolerance.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Each PIF gene promoter contained multiple cis-acting elements.

Taxon: cottonGossypium hirsutumt0
Gene: PIFe0
Outcome: multiple cis-acting elementse0

Verbatim

e0
“the promoter of each PIF gene contains multiple cis-acting elements”
✓ located verbatim in the source · abstract, characters 616–683

t0
“cotton”
✓ located verbatim in the source · title, characters 39–45

Title

Identification and characterization of cotton PHYTOCHROME-INTERACTING FACTORS in temperature-dependent flowering

Ling-yun Liu; Ming-zhu Jia; Sheng-nan Wang; et al. Journal of Experimental Botany 2023. doi:10.1093/jxb/erad119

Other claims from this paper (8)

Observation The authors identified 68 PIF proteins and coding genes from one allotetraploid and three diploid ancestors.
Observation Cotton PIFs had APA and APB motifs, a bHLH domain and a nuclear localization sequence.
Observation Cotton genome evolution probably involved loss, recombination and tandem replication.
Association Cotton PIF expression responded significantly differently to high versus low temperature.
Intervention effect High temperature induced GhPIF4a.
Intervention effect GhPIF4a promoted flowering in cotton.
Intervention effect GhPIF4a promoted flowering in Arabidopsis.
Association GhPIF4a bound the GhFT promoter, with binding increasing as temperature rose.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Analysis of the SNAT promoter regions revealed 32 cis-acting elements.

Taxon: CitrusCitrust0
Outcome: cis-acting elementse0
Value: 32e0

Verbatim

e0
“Analysis of the promoter regions revealed 32 cis-acting elements”
✓ located verbatim in the source · abstract, characters 1022–1086

t0
“Citrus”
✓ located verbatim in the source · title, characters 75–81

Title

Identification of SNAT Gene Family and Their Response to Abiotic Stress in Citrus

Qian Yao; Mingzhou Gu; Chengyang Song; et al. Horticulturae 2025. doi:10.3390/horticulturae11040399

Other claims from this paper (12)

Observation The study identified 21 members of the SNAT gene family across five citrus genomes.
Observation The citrus SNAT genes were distributed over five chromosomes, with the majority predicted to localize within chloroplasts.
Observation Citrus SNAT genes had between 1 and 8 exons.
Observation Citrus SNAT genes had between 0 and 7 introns.
Observation Citrus SNAT genes had 1 to 2 conserved domains.
Observation Citrus SNAT genes had 5 to 8 motifs.
Observation Phylogenetic analysis classified the citrus SNAT genes into four subgroups.
Observation Citrus SNAT genes showed significant collinearity with SNAT genes in rice.
Observation Among the promoter cis-acting elements, those responsive to light, abscisic acid and drought were the most common.
Observation SNAT genes in trifoliate orange showed tissue specificity, with the highest expression levels in leaves.
Intervention effect PtrSNAT1 was notably upregulated under various stress conditions.
Recommendation The authors suggest PtrSNAT1 is a potential target for developing rootstocks with enhanced resistance to abiotic stress.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The SlPMEI promoter contained pollen specific cis acting elements.

Taxon: tomatoSolanum lycopersicumt0
Gene: SlPMEIe0
Outcome: pollen-specific cis-acting elementse0

Verbatim

e0
“Promoter analysis of SlPMEI revealed pollen-specific cis-acting elements (pollen lat52 and g10).”
✓ located verbatim in the source · abstract, characters 606–702

t0
“tomato”
✓ located verbatim in the source · title, characters 34–40

Title

SlPMEI, a pollen-specific gene in tomato

Woong Bom Kim; Chan Ju Lim; Hyun A. Jang; et al. Canadian Journal of Plant Science 2013. doi:10.4141/cjps2013-084

Other claims from this paper (8)

Observation The authors cloned and characterized a novel tomato PMEI gene, SlPMEI.
Observation SlPMEI was expressed specifically in pollen.
Observation SlPMEI expression was independent of abiotic stress, pathogen exposure and growth stage.
Observation Histochemistry showed pollen specific promoter activity in Arabidopsis.
Observation Histochemistry showed pollen specific promoter activity in tomato.
Observation Transgenic tomato stamens showed pollen specific GUS expression.
Observation The authors infer strong pollen specific SlPMEI promoter activity.
Recommendation The authors suggest the promoter could aid development of transgenic plants.

“cis -acting elements”

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