Search claims · PlantClaims

Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors recommend accounting for genotype by location interaction when validating SNPs for marker assisted breeding.

Taxon: fenugreekTrigonella foenum-graecumt0
Outcome: validating the effect of each SNPe0
Qualifier: marker-assisted breeding programe0

Verbatim

e0
“importance of GxL in validating the effect of each SNP to make better decisions about its suitability in the marker-assisted breeding program”
✓ located verbatim in the source · abstract, characters 1359–1500

t0
“fenugreek”
✓ located verbatim in the source · title, characters 100–109

Title

Identifying SNP markers associated with distinctness, uniformity, and stability testing in Egyptian fenugreek genotypes

Mustafa M. H. Abd El-Wahab; Hashim Abdel-Lattif; Kh. S. Emara; et al. PLoS ONE 2023. doi:10.1371/journal.pone.0291527

Other claims from this paper (8)

Association Four of twelve measured traits correlated above 0.94 across the two locations.
Association Seed yield showed significant genotype by location interaction.
Association Seed yield was superior at Wadi relative to Giza.
Observation Few genotypes overlapped between Wadi and Giza for seed yield.
Mechanism The authors attribute the Wadi yield advantage to the maternal habitat of most genotypes.
Observation Thirty-nine SNPs showed conditional neutrality in the association study.
Observation Four SNPs showed pleiotropic effects.
Observation Forty additional SNPs overlapped between both locations and had similar effects on their associated traits.

Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors interpret the findings as validating that the MEINOX domain has been conserved between plants and animals as an interaction domain for developmental regulators.

Taxon: ArabidopsisArabidopsist0
Gene: MEINOX domaine0
Outcome: conserved between plants and animals as an interaction domaine0

Verbatim

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 4–15

e0
“the MEINOX domain has been conserved between plants and animals as an interaction domain for developmental regulators”
✓ located verbatim in the source · abstract, characters 683–800

Title

The Arabidopsis BELL1 and KNOX TALE Homeodomain Proteins Interact through a Domain Conserved between Plants and Animals

Mohammed Bellaoui; Mark S. Pidkowich; Alon Samach; et al. The Plant Cell 2001. doi:10.1105/tpc.010161

Other claims from this paper (5)

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

SRS validated an AtNAP SAG113 promoter interaction.

Taxon: plantt0
Outcome: validating the interactione0

Not reportedComparatorValue

Verbatim

e0
“we demonstrated the feasibility of the SRS system in validating the interaction between the senescence-associated TF AtNAP (Zhang and Gan, 2012) and its downstream target gene, the SAG113 promoter”
✓ located verbatim in the source · abstract, characters 5822–6018

t0
“plant”
✓ located verbatim in the source · title, characters 60–65

Title

SRS: An intelligent and robust approach for confirmation of plant transcription factor–DNA interactions

Qi Zhou; Yulu Ye; Haiyan He; et al. Plant Biotechnology Journal 2024. doi:10.1111/pbi.14488

Other claims from this paper (19)

Intervention effect Expression of all tested SGR1 genes accelerated yellowing in N. benthamiana leaves.
Observation AtSGR1 caused the fastest and most significant chlorophyll degradation.
Intervention effect Kozak sequence enhancement boosted chlorophyll degradation.
Intervention effect Darkness boosted chlorophyll degradation.
Intervention effect Maintaining 22 to 25°C boosted chlorophyll degradation.
Method / resource Fourteen image features correlated with SPAD values at r greater than 0.5.
Method / resource The stacking model predicted SPAD values with R2 of 0.85.
Method / resource The stacking model predicted SPAD values with RMSE of 2.4.
Method / resource The stacking model predicted SPAD values with NRMSE of 12.24%.
Method / resource A homozygous CR19 plant had all six NbSGR1 genes edited.
Observation CR19 delayed leaf yellowing in darkness.
Observation CR19 reduced chlorophyll degradation in darkness.
Method / resource The FAR1 FHY1 reporter turned leaves yellow while controls changed minimally.
Observation SGR1 expression increased in the presence of FAR1 and the FHY1 promoter.
Method / resource A mutated FAR1 and noninteracting OsTB1 promoter supported reporter specificity.
Method / resource The TIG1 SAUR39 reporter caused significant colour changes and increased SGR1 transcript levels versus controls.
Method / resource The MYB29 SUR1 construct produced expected colour changes.
Method / resource avrBs3 and pepper Bs3 promoter coexpression produced noticeable colour changes.
Method / resource SRS worked in rapeseed and lettuce, although some plants showed unexpected phenotypes.

Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors suggest validating stability measures for G04, G05, G06 and G09.

Taxon: wheatTriticum aestivumt0
Material: G04, G05, G06, and G09e1
Outcome: examined for validation stability measurese0

Verbatim

e0
“This suggests that they could be examined for validation stability measures.”
✓ located verbatim in the source · abstract, characters 2122–2198

e1
“G04, G05, G06, and G09 were the top-ranking genotypes”
✓ located verbatim in the source · abstract, characters 1972–2025

t0
“wheat”
✓ located verbatim in the source · title, characters 22–27

Title

Selection of suitable wheat genotypes under thermal stress and complex genotype-environment interaction using stability analyses and selection indices

Abdelhalim Ghazy; Walid Ben Romdhane; Majed Alotaibi; et al. PeerJ 2025. doi:10.7717/peerj.20061

Other claims from this paper (9)

Observation Genotype by environment interaction was significant, indicating variation in thermal tolerance.
Method / resource The AMMI2 biplot indicated combined variance of 99.00%.
Observation Eleven genotypes had stable grain yield across six environments.
Observation G05, G09 and G17 were more stable.
Method / resource WAASB selected G04, G05, G06, G09 and G18 for stable high grain yield.
Method / resource WAASB-GY identified the same best group except G18.
Association Ten selection indices were significantly positively associated under optimal and thermal stress grain yield.
Observation Most indices had high heritability, accuracy and genotype by environment correlation, except SNPI.
Method / resource The multi-trait index ranked G04, G05, G06 and G09 highest both before and after variable removal.

Method / resourceauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The datasets are suitable for validating wheat growth models of elevated CO2 interactions with nitrogen supply or warming.

Taxon: wheatTriticum aestivume0
Outcome: validate the interaction of elevated CO2 concentration and either N supply or high temperature during grain filling in wheat growth modelse0
Comparator: N supply or high temperaturee0

Not reportedValue

Verbatim

e0
“Data provided herein are suited to validate the interaction of elevated CO2 concentration and either N supply or high temperature during grain filling in wheat growth models.”
✓ located verbatim in the source · abstract, characters 978–1152

Title

Experimental data from the Braunschweig FACE studies on wheat growth responses to elevated CO2 in combination with nitrogen supply or infrared warming during grain filling.

Remy Manderscheid; Markus Dier; Martin Erbs; et al. Open Data Journal for Agricultural Research 2020. doi:10.18174/odjar.v6i0.16397

Other claims from this paper (1)

Method / resource The paper provides datasets on weather, soil, plant growth, nitrogen, yield, and canopy temperature from two wheat FACE studies.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

RT-qPCR of a subset of genes induced at 4 DAI correlated positively with the microarray data, validating the microarray results.

Outcome: correlated positively with the microarray datae0
Comparator: microarray datae0

Verbatim

e0
“The microarray results were validated by examining a subset of induced genes at 4 DAI by quantitative real-time reverse transcriptase PCR (RT-qPCR) analysis all of which correlated positively with the microarray data”
✓ located verbatim in the source · abstract, characters 824–1040

Title

Analysis of global host gene expression during the primary phase of the Arabidopsis thaliana–Plasmodiophora brassicae interaction

Arati Agarwal; Vijay Kaul; Robert Faggian; et al. Functional Plant Biology 2011. doi:10.1071/fp11026

Other claims from this paper (5)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Validation of the P. capsici pathogenesis gene NPP1 expression corroborated the reference gene findings.

Taxon: Piper nigrumPiper nigrumt0
Interactor: P. capsiciPhytophthora capsicie3pathogen
Gene: NPP1e3
Outcome: NPP1 expressione3

Verbatim

t0
“Phytophthora capsici Leonian during its interaction with Piper nigrum L.”
✓ located verbatim in the source · title, characters 71–143

e3
“These findings were further corroborated by validating the P. capsici pathogenesis gene NPP1 expression”
✓ located verbatim in the source · abstract, characters 1141–1244

Title

Validation of reference gene stability for normalization of RT-qPCR in Phytophthora capsici Leonian during its interaction with Piper nigrum L.

Saranya Vijayakumar; Manjula Sakuntala Scientific Reports 2024. doi:10.1038/s41598-024-58139-y

Other claims from this paper (3)

Method / resource ef1, ws21 and ubc were the three most stable reference genes in P. capsici across the combined dataset.
Method / resource ef1, ws21 and act were the most stable reference genes in P. capsici at the infection stages.
Method / resource ef1, btub and ubc were the most stable reference genes in P. capsici during its developmental stages.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Solute potential, temperature and their interaction significantly determined germination parameters in both cultivars.

Taxon: WheatTriticum aestivumt0
Treatment: solute potential, temperature, and reciprocal actione0
Outcome: GR, GP, and other germination parameters (GI, GRI, CVG, SVI-I, SVI-II, GE, and MGT)e0
Value: p ≤ 0.01e0

Not reportedDirection

Verbatim

e0
“GR, GP, and other germination parameters (GI, GRI, CVG, SVI-I, SVI-II, GE, and MGT) were significantly determined by solute potential, temperature, and reciprocal action in both cultivars (p ≤ 0.01).”
✓ located verbatim in the source · abstract, characters 509–708

t0
“Wheat (Triticum aestivum L.)”
✓ located verbatim in the source · title, characters 80–108

Title

Validating the Impact of Water Potential and Temperature on Seed Germination of Wheat (Triticum aestivum L.) via Hydrothermal Time Model

Saleha Saeed; Abd Ullah; Sami Ullah; et al. Life 2022. doi:10.3390/life12070983

Other claims from this paper (6)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Validation of Arabidopsis PPIs, including membrane PPIs implicated in phosphate homeostasis, shows the fidelity of the assay in various cellular compartments in planta.

Taxon: ArabidopsisArabidopsise2
Outcome: fidelity of this assaye2
Qualifier: in various cellular compartmentse2

Verbatim

e2
“By validating a few of the Arabidopsis PPIs, including the membrane PPIs implicated in phosphate homeostasis, we proved the fidelity of this assay for detection of PPIs in various cellular compartments in planta”
✓ located verbatim in the source · abstract, characters 1116–1327

Title

Detection of membrane protein–protein interaction in planta based on dual‐intein‐coupled tripartite split‐GFP association

Tzu‐Yin Liu; Wen‐Chun Chou; Wei‐Yuan Chen; et al. The Plant Journal 2018. doi:10.1111/tpj.13874

Other claims from this paper (2)

“validating the interaction”

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