Paper · 2023 · Frontiers in Plant Science

Salinity stress-induced phosphorylation of INDETERMINATE-DOMAIN 4 (IDD4) by MPK6 regulates plant growth adaptation in Arabidopsis

Anamika Rawat; Ronny Völz; Arsheed Sheikh; et al.

10
claims
20
verbatim quotes
17
citations
2
research areas
✓
Open access · cc-by

Abstract

The INDETERMINATE DOMAIN ( IDD ) family belongs to a group of plant-specific transcription factors that coordinates plant growth/development and immunity. However, the function and mode of action of IDDs during abiotic stress, such as salt, are poorly understood. We used idd4 transgenic lines and screened them under salt stress to find the involvement of IDD4 in salinity stress tolerance The genetic disruption of IDD4 increases salt-tolerance, characterized by sustained plant growth, improved Na + /K + ratio, and decreased stomatal density/aperture. Yet, IDD4 overexpressing plants were hypersensitive to salt-stress with an increase in stomatal density and pore size. Transcriptomic and ChIP-seq analyses revealed that IDD4 directly controls an important set of genes involved in abiotic stress/salinity responses. Interestingly, using anti-IDD4-pS73 antibody we discovered that IDD4 is specifically phosphorylated at serine-73 by MPK6 in vivo under salinity stress. Analysis of plants expressing the phospho-dead and phospho-mimicking IDD4 versions proved that phosphorylation of IDD4 plays a crucial role in plant transcriptional reprogramming of salt-stress genes. Altogether, we show that salt stress adaption involves MPK6 phosphorylation of IDD4 thereby regulating IDD4 DNA-binding and expression of target genes.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

IDD4 disruption increased salt tolerance.

Taxon
ArabidopsisArabidopsist0
Treatment
genetic disruption of IDD4e0
Gene
IDD4e0
Outcome
salt-tolerancee0
Direction
increasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The genetic disruption of IDD4 increases salt-tolerance, characterized by sustained plant growth, improved Na + /K + ratio, and decreased stomatal density/aperture.”

✓ located verbatim in the source · abstract, characters 391–555 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

IDD4 disruption sustained plant growth under salt stress.

Taxon
ArabidopsisArabidopsist0
Treatment
genetic disruption of IDD4e0
Gene
IDD4e0
Outcome
plant growthe0
Direction
sustainede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The genetic disruption of IDD4 increases salt-tolerance, characterized by sustained plant growth, improved Na + /K + ratio, and decreased stomatal density/aperture.”

✓ located verbatim in the source · abstract, characters 391–555 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

IDD4 disruption improved the Na to K ratio.

Taxon
ArabidopsisArabidopsist0
Treatment
genetic disruption of IDD4e0
Outcome
Na + /K + ratioe0
Direction
improvede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The genetic disruption of IDD4 increases salt-tolerance, characterized by sustained plant growth, improved Na + /K + ratio, and decreased stomatal density/aperture.”

✓ located verbatim in the source · abstract, characters 391–555 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

IDD4 disruption decreased stomatal density and aperture.

Taxon
ArabidopsisArabidopsist0
Treatment
genetic disruption of IDD4e0
Outcome
stomatal density/aperturee0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The genetic disruption of IDD4 increases salt-tolerance, characterized by sustained plant growth, improved Na + /K + ratio, and decreased stomatal density/aperture.”

✓ located verbatim in the source · abstract, characters 391–555 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

IDD4 overexpression caused salt hypersensitivity.

Taxon
ArabidopsisArabidopsist0
Treatment
IDD4 overexpressinge0
Outcome
hypersensitive to salt-stresse0
Direction
hypersensitivee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“IDD4 overexpressing plants were hypersensitive to salt-stress with an increase in stomatal density and pore size.”

✓ located verbatim in the source · abstract, characters 561–674 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

IDD4 overexpression increased stomatal density and pore size.

Taxon
ArabidopsisArabidopsist0
Treatment
IDD4 overexpressinge0
Outcome
stomatal density and pore sizee0
Direction
increasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“IDD4 overexpressing plants were hypersensitive to salt-stress with an increase in stomatal density and pore size.”

✓ located verbatim in the source · abstract, characters 561–674 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

IDD4 directly controlled genes involved in salinity responses.

Taxon
ArabidopsisArabidopsist0
Gene
IDD4e0
Outcome
genes involved in abiotic stress/salinity responsese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“IDD4 directly controls an important set of genes involved in abiotic stress/salinity responses.”

✓ located verbatim in the source · abstract, characters 726–821 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

MPK6 phosphorylated IDD4 at serine-73 in vivo under salinity stress.

Taxon
ArabidopsisArabidopsist0
Treatment
salinity stresse0
Gene
IDD4e0
Outcome
phosphorylated at serine-73 by MPK6e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“IDD4 is specifically phosphorylated at serine-73 by MPK6 in vivo under salinity stress.”

✓ located verbatim in the source · abstract, characters 886–973 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

IDD4 phosphorylation contributed to transcriptional reprogramming of salt stress genes.

Taxon
ArabidopsisArabidopsist0
Gene
IDD4e0
Outcome
plant transcriptional reprogramming of salt-stress genese0
Qualifier
phosphorylation of IDD4e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“phosphorylation of IDD4 plays a crucial role in plant transcriptional reprogramming of salt-stress genes.”

✓ located verbatim in the source · abstract, characters 1069–1174 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

MPK6 phosphorylation of IDD4 regulated its DNA binding and target gene expression.

Taxon
ArabidopsisArabidopsist0
Gene
IDD4e0
Outcome
IDD4 DNA-binding and expression of target genese0
Qualifier
MPK6 phosphorylation of IDD4e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“salt stress adaption involves MPK6 phosphorylation of IDD4 thereby regulating IDD4 DNA-binding and expression of target genes.”

✓ located verbatim in the source · abstract, characters 1200–1326 · show in text ↑
t0

“Arabidopsis”

✓ located verbatim in the source · title, characters 118–129 · show in text ↑

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loss of function · tolerance: abiotic · ArabidopsisPositive and negative results

40 papers: 22 positive, 18 negative or no effect

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loss of function · growth · ArabidopsisPositive and negative results

234 papers: 51 positive, 183 negative or no effect

50 papers in the same direction as this paper · 183 in the opposite direction

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.