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“expression changes”

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Observation 5377

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Observationobservedoriginal resultmeasured

Claim · model-written summary

SOD expression changes were consistent with ROS accumulation changes.

Gene
SODse0
Outcome
expression of SODse0

Verbatim

e0

“The changes in the expression of SODs were consistent with the accumulations of ROS”

✓ located verbatim in the source · abstract, characters 1153–1236
t0

“tomato”

✓ located verbatim in the source · title, characters 45–51

Title

Functional analyses of lipocalin proteins in tomato

Anung Wahyudi; Dinni Ariyani; Gang Ma; et al. Plant Biotechnology 2018. doi:10.5511/plantbiotechnology.18.0620a

Other claims from this paper (11)
Observationobservedreview summarybasis n/a

Claim · model-written summary

Allopolyploids in early generations often show rapid changes in gene expression.

Taxon
Plant Allopolyploidse0
Outcome
rapid changes in gene expressione1

Verbatim

e0

“Plant Allopolyploids”

✓ located verbatim in the source · title, characters 43–63
e1

“Allopolyploids in early generations often show rapid changes in gene expression”

✓ located verbatim in the source · abstract, characters 98–177

Title

Changes in Gene Expression in Evolution of Plant Allopolyploids

Yong Zhuang; Longzheng Chen; Yingui Yang; et al. 植物学通报 2006. doi:10.3724/cbb-t25-184

Observationobservedoriginal resultmeasured

Claim · model-written summary

Ripening involves changes in gene expression.

Outcome
changes in gene expressione0

Verbatim

e0

“we demonstrated that ripening involves changes in gene expression”

✓ located verbatim in the source · abstract, characters 21–86
t0

“tomato ripening genes”

✓ located verbatim in the source · title, characters 26–47

Title

Identifying and silencing tomato ripening genes with antisense genes

Don Grierson Plant Biotechnology Journal 2015. doi:10.1111/pbi.12463

Other claims from this paper (15)

Intervention effect 4125

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Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Salt exposure caused quantitative changes in Prosopis farcta root gene expression.

Taxon
Prosopis farctaProsopis farctat0
Treatment
salte0
Outcome
quantitative changes of gene expressione0
Direction
changese0

Not reportedComparator

Verbatim

e0

“Qualitative as well as quantitative changes of gene expression as induced by salt could be observed”

✓ located verbatim in the source · abstract, characters 1074–1173
t0

“Prosopis farcta”

✓ located verbatim in the source · title, characters 32–47

Title

Salt induced gene expression in Prosopis farcta

I.M. Heimer; A. Golan; Herman Lips Plant Physiol., Suppl.; (United States) 1987

Other claims from this paper (1)
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

5-Azacytidine-treated Zaoyoutao calli showed expression changes verifying the methylation-expression relationship.

Taxon
Prunus persica 'Zhong You 4'Prunus persicae2
Material
'Zaoyoutao'e0
Treatment
5-Azacytidine (5-AzaC)e0
Outcome
expression level changese0

Not reportedComparatorDirection

Verbatim

e0

“expression level changes in 'Zaoyoutao' calli treated with 5-Azacytidine (5-AzaC)”

✓ located verbatim in the source · abstract, characters 1354–1435
e1

“which was further verified by the expression level changes”

✓ located verbatim in the source · abstract, characters 1320–1378
e2

“Prunus persica 'Zhong You 4' (ZY4)”

✓ located verbatim in the source · abstract, characters 489–523

Title

Genome assembly and epigenetic regulation of auxin pathway genes during peach fruit swelling

Nan Hou; Ao Li; Yuge Li; et al. Plant Physiology and Biochemistry 2026. doi:10.1016/j.plaphy.2026.111234

Other claims from this paper (7)
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

AC2 expression induced clear leaf and flower phenotypic changes in tobacco.

Organ / stage
leavese0
Treatment
Expression of AC2 RSSe0
Gene
AC2 RSSe0
Outcome
clear phenotypic changese0

Not reportedComparatorDirection

Verbatim

e0

“Expression of AC2 RSS in transgenic tobacco plants induced clear phenotypic changes both in leaves and in flowers.”

✓ located verbatim in the source · abstract, characters 760–874

Title

Expression of geminiviral AC2 RNA silencing suppressor changes sugar and jasmonate responsive gene expression in transgenic tobacco plants

Arto J Soitamo; Balaji Jada; Kirsi Lehto BMC Plant Biology 2012. doi:10.1186/1471-2229-12-204

Other claims from this paper (11)

Association 2451

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Associationobservedoriginal resultmeasured

Claim · model-written summary

Presence or absence changes in TF expression were more likely associated with target gene expression changes than quantitative TF expression changes.

Taxon
MaizeZea mayst0
Gene
TFe0
Outcome
changes in target gene expressione0
Direction
more likelye0
Comparator
quantitative changes in TF gene expressione0

Verbatim

e0

“presence/absence changes rather than quantitative changes in TF gene expression are more likely associated with changes in target gene expression”

✓ located verbatim in the source · abstract, characters 905–1050
t0

“Maize”

✓ located verbatim in the source · title, characters 33–38

Title

Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions

Peng Zhou; Zhi Li; Erika Magnusson; et al. The Plant Cell 2020. doi:10.1105/tpc.20.00080

Other claims from this paper (4)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Changes in star pattern corresponded with gene expression changes.

Taxon
PetuniaPetuniat0
Outcome
gene expressione0
Qualifier
changes in the star patterne0
Comparator
star patterne0

Not reportedGeneOrgan / stageDirection

Verbatim

e0

“These changes in the star pattern corresponded to changes in gene expression.”

✓ located verbatim in the source · abstract, characters 692–769
t0

“Petunia ×hybrida Vilm”

✓ located verbatim in the source · title, characters 40–61

Title

Gene Expression in the Star Mutation of Petunia ×hybrida Vilm

Robert J. Griesbach; Ronald M. Beck; John Hammond; et al. Journal of the American Society for Horticultural Science 2007. doi:10.21273/jashs.132.5.680

Other claims from this paper (4)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Polyphenol changes aligned with changes in gene expression.

Taxon
kiwifruitActinidia deliciosat0
Outcome
changes in gene expressione0
Qualifier
aligned withe0

Not reportedOrgan / stageDirection

Verbatim

e0

“which aligned with observed changes in gene expression”

✓ located verbatim in the source · abstract, characters 1616–1670
t0

“kiwifruit”

✓ located verbatim in the source · title, characters 49–58

Title

Uncovering the hidden dynamics of pollination in kiwifruit maturity and ripening

Marios Georgios Kollaros; Michail Michailidis; Alexandra Poulouktsi; et al. Postharvest Biology and Technology 2025. doi:10.1016/j.postharvbio.2025.113763

Other claims from this paper (12)

Mechanism 1932

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Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

PHE1 and MEA expression changes could not be fully explained by FIS2 expression changes.

Gene
FIS2e0
Outcome
changes of PHE1 and MEA expressione0
Qualifier
could not be fully accounted fore0

Not reportedTaxon

Verbatim

e0

“the changes of PHE1 and MEA expression could not be fully accounted for by the corresponding fluctuations of FIS2 expression”

✓ located verbatim in the source · abstract, characters 1243–1367

Title

Parental Genome Dosage Imbalance Deregulates Imprinting in Arabidopsis

Pauline E. Jullien; Frédéric Berger PLoS Genetics 2010. doi:10.1371/journal.pgen.1000885

Other claims from this paper (2)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer that changes in hypocotyl elongation reflect changes in AtEXPA5 expression.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
AtEXPA5e0
Outcome
hypocotyl elongatione0
Qualifier
reflect changes in AtEXPA5 expressione0

Verbatim

e0

“implying that changes in hypocotyl elongation reflect changes in AtEXPA5 expression”

✓ located verbatim in the source · abstract, characters 557–640
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 50–70

Title

Ethylene negatively regulates EXPA5 expression in Arabidopsis thaliana

Seung‐Hyun Son; Soo Chul Chang; Chan Ho Park; et al. Physiologia Plantarum 2011. doi:10.1111/j.1399-3054.2011.01552.x

Other claims from this paper (9)
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Changes in petal physiology from ethylene exposure may result from rapid changes in gene expression.

Outcome
changes in petal physiologye1
Qualifier
rapid changes in gene expressione1

Verbatim

t0

“Carnation Petals”

✓ located verbatim in the source · title, characters 36–52
e1

“changes in petal physiology resulting from exposure to ethylene may be the result of rapid changes in gene expression”

✓ located verbatim in the source · abstract, characters 1451–1568

Title

Ethylene-Induced Gene Expression in Carnation Petals

William R. Woodson; Kay A. Lawton PLANT PHYSIOLOGY 1988. doi:10.1104/pp.87.2.498

Other claims from this paper (9)

Method / resource 319

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Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

Gene OscilloScope tracks expression changes across experiments and identifies expression patterns.

Taxon
plantsViridiplantaet0
Outcome
gene expression changese0
Value
many different experimentse0

Verbatim

e0

“track how gene expression changes across many different experiments using the Gene OscilloScope. This tool can identify interesting expression patterns”

✓ located verbatim in the source · abstract, characters 1218–1369
t0

“plants”

✓ located verbatim in the source · title, characters 38–44

Title

PLEXdb: gene expression resources for plants and plant pathogens

S. Dash; J. Van Hemert; L. Hong; et al. Nucleic Acids Research 2011. doi:10.1093/nar/gkr938

Other claims from this paper (3)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Daily sampling captured subtle changes in cotton fiber gene expression.

Taxon
Gossypium hirsutum (cotton)Gossypium hirsutumt0
Outcome
Subtle gene expression changese0

Not reportedComparator

Verbatim

e0

“Subtle gene expression changes are captured by the daily sampling”

✓ located verbatim in the source · abstract, characters 965–1030
t0

“Gossypium hirsutum (cotton)”

✓ located verbatim in the source · title, characters 50–77

Title

A high-resolution model of gene expression during Gossypium hirsutum (cotton) fiber development

Corrinne E. Grover; Josef J. Jareczek; Sivakumar Swaminathan; et al. BMC Genomics 2025. doi:10.1186/s12864-025-11360-z

Other claims from this paper (4)
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Real-time PCR validated microarray gene expression changes.

Taxon
Soybean Sproutst0
Outcome
gene expression changese0
Comparator
microarray analysise0

Verbatim

e0

“gene expression changes indicated by microarray analysis were validated by real-time PCR”

✓ located verbatim in the source · abstract, characters 1338–1426
t0

“Soybean Sprouts”

✓ located verbatim in the source · title, characters 29–44

Title

Gene Expression Profiling in Soybean Sprouts With Elevated Disease Resistance Against Pseudomonas Putida Infection

Radhika Dhakal; Muhammad Fazle Rabbee; Md Sarafat Ali; et al. Bangladesh Journal of Botany 2023. doi:10.3329/bjb.v52i1.65243

Other claims from this paper (6)

Recommendation 61

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Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors propose gene-expression and allele-bias changes as tools for breeding-population assessment.

Taxon
soybeanGlycine maxt0
Outcome
valuable tools for plant breeders in the assessment of breeding populationse0

Verbatim

e0

“changes in gene expression, both additive and non-additive, and changes in allele specific expression bias may explain agronomic traits, and be valuable tools for plant breeders in the assessment of breeding populations”

✓ located verbatim in the source · abstract, characters 1694–1913
t0

“soybean F1 hybrid”

✓ located verbatim in the source · title, characters 37–54

Title

Changes in gene expression between a soybean F1 hybrid and its parents are associated with agronomically valuable traits

Earl Taliercio; David Eickholt; Rakin Rouf; et al. PLoS ONE 2017. doi:10.1371/journal.pone.0177225

Other claims from this paper (7)
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The ESTs are efficient molecular markers for gene expression changes during ectomycorrhizal symbiosis formation.

Taxon
Eucalyptus globulusEucalyptus globuluse0
Outcome
efficient molecular markers to analyze changes in gene expressione2

Verbatim

e0

“Random sequencing of cDNA clones from Eucalyptus globulus-Pisolithus tinctorius ectomycorrhizal tissues was carried out”

✓ located verbatim in the source · abstract, characters 0–119
e2

“These ESTs represent efficient molecular markers to analyze changes in gene expression during the formation of the ectomycorrhizal symbiosis”

✓ located verbatim in the source · abstract, characters 260–400

Title

Expressed sequence tags of randomly selected cDNA clones from Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza.

D Tagu; F Martin PubMed 1995

Other claims from this paper (1)
Recommendationhypothesisoriginal resultpositivebasis n/a

Claim · model-written summary

Changes in GhSBPase expression may have potential for breeding enhanced cotton photosynthetic efficiency.

Taxon
Upland Cottont0
Outcome
breeding for enhanced cotton photosynthetic efficiencye2

Verbatim

t0

“Upland Cotton (Gossypium hirsutum L.)”

✓ located verbatim in the source · title, characters 140–177
e2

“suggesting that changes in the expression of the GhSBPase had potential applicability in breeding for enhanced cotton photosynthetic efficiency”

✓ located verbatim in the source · abstract, characters 1687–1830

Title

Sequence Characteristics and Expression Analysis of the Gene Encoding Sedoheptulose-1,7-Bisphosphatase, an Important Calvin Cycle Enzyme in Upland Cotton (Gossypium hirsutum L.)

Maoni Chao; Genhai Hu; Jie Dong; et al. International Journal of Molecular Sciences 2023. doi:10.3390/ijms24076648

Other claims from this paper (9)

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