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Observationobservedoriginal resultmeasured

Claim · model-written summary

No naked (-)RNA templates are present during Tomato bushy stunt virus replication.

Taxon
plantsViridiplantaee0
Outcome
absence of naked (-)RNA templatese2

Verbatim

e0

“Replication of plus-strand RNA [(+)RNA] viruses of plants”

✓ located verbatim in the source · abstract, characters 12–69
e2

“we demonstrate the absence of naked (-)RNA templates during replication”

✓ located verbatim in the source · abstract, characters 607–678

Title

Template Role of Double-Stranded RNA in Tombusvirus Replication

Nikolay Kovalev; Judit Pogany; Peter D. Nagy Journal of Virology 2014. doi:10.1128/jvi.03842-13

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Single stranded templates underwent multiple replication rounds.

Outcome
single-stranded DNA templates undergo more than one round of replicatione0

Verbatim

e0

“Both strands of template DNA are synthesized and single-stranded DNA templates undergo more than one round of replication.”

✓ located verbatim in the source · abstract, characters 306–428
t0

“pea”

✓ located verbatim in the source · title, characters 53–56

Title

Characterisation and mode of in vitro replication of pea chloroplast OriA sequences

Malireddy K. REDDY; Nirupam Roy CHOUDHURY; Dhirendra KUMAR; et al. European Journal of Biochemistry 1994. doi:10.1111/j.1432-1033.1994.tb18697.x

Other claims from this paper (7)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Shorter templates with HCPro enabled effective trans-replication in plant cells.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Treatment
addition of helper component proteinase (HCPro)e0
Interactor
Potato virus XPotato virus Xt0pathogen
Outcome
effective trans-replication of the templates in plant cellse0
Value
shorter templatese0

Verbatim

e0

“Further optimization of the system with shorter templates and addition of helper component proteinase (HCPro), a potyviral silencing suppressor, led to effective trans-replication of the templates in plant cells.”

✓ located verbatim in the source · abstract, characters 1275–1487
e1

“Nicotiana benthamiana leaves”

✓ located verbatim in the source · abstract, characters 1001–1029
t0

“Potato Virus X”

✓ located verbatim in the source · title, characters 21–35

Title

Trans-replication of Potato Virus X in planta

Pinky Dutta Työväentutkimus Vuosikirja 2018

Other claims from this paper (2)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Exogenous 180-kDa protein and replication templates added after translation can contribute to replication and can be replicated, respectively.

Taxon
tobacco BY-2 protoplastse1
Outcome
contribute to replicatione0

Verbatim

e0

“posttranslationally added exogenous 180-kDa protein and replication templates can contribute to replication and can be replicated, respectively”

✓ located verbatim in the source · abstract, characters 1511–1654
e1

“evacuolated tobacco BY-2 protoplasts”

✓ located verbatim in the source · abstract, characters 161–197

Title

Identification of a Ribonucleoprotein Intermediate of Tomato Mosaic Virus RNA Replication Complex Formation

Keisuke Komoda; Natsuki Mawatari; Yuka Hagiwara-Komoda; et al. Journal of Virology 2006. doi:10.1128/jvi.01921-06

Other claims from this paper (5)
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

The authors propose that replication templates in the centromere originate from multiple CENH3-nucleosome complexes bound to CentGm sequences.

Taxon
soybeanGlycine maxt0
Gene
CENH3e0
Outcome
replication templatese0

Verbatim

t0

“soybean centromeres”

✓ located verbatim in the source · title, characters 48–67
e0

“We propose a model in which replication templates within the centromere region originate from multiple CENH3-nucleosome complexes bound to CentGm sequences”

✓ located verbatim in the source · abstract, characters 1491–1646

Title

Genetic diversity and architectural dynamics of soybean centromeres

Yicheng Huang; Enlai Guan; Shipeng Song; et al. Genome biology 2026. doi:10.1186/s13059-025-03924-9

Other claims from this paper (6)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Tomato bushy stunt virus replication involves dsRNA templates in strand displacement reactions.

Taxon
plantsViridiplantaee0
Interactor
TBSVTomato bushy stunt viruse4pathogen
Outcome
mechanism of TBSV replicatione4
Qualifier
strand displacement reactionse4

Verbatim

e0

“Replication of plus-strand RNA [(+)RNA] viruses of plants”

✓ located verbatim in the source · abstract, characters 12–69
e4

“Radioactive nucleotide chase experiments showed that the mechanism of TBSV replication involves the use of dsRNA templates in strand displacement reactions”

✓ located verbatim in the source · abstract, characters 842–997

Title

Template Role of Double-Stranded RNA in Tombusvirus Replication

Nikolay Kovalev; Judit Pogany; Peter D. Nagy Journal of Virology 2014. doi:10.1128/jvi.03842-13

Other claims from this paper (5)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Distinct BARE transcript subfamilies may separately supply proteins and replication templates.

Gene
BAREe0
Outcome
providing the proteins and replication templatese0
Qualifier
may play independent rolese0

Not reportedTaxon

Verbatim

e0

“The data suggest that distinct subfamilies of transcripts may play independent roles in providing the proteins and replication templates for the BARE retrotransposon life cycle.”

✓ located verbatim in the source · abstract, characters 1462–1639

Title

BARE retrotransposons produce multiple groups of rarely polyadenylated transcripts from two differentially regulated promoters

Wei Chang; Alan H. Schulman The Plant Journal 2008. doi:10.1111/j.1365-313x.2008.03572.x

Other claims from this paper (10)
Mechanismobservedreview summarybasis n/a

Claim · model-written summary

Host factors participate in assembling and activating viral RNA replication complexes and selecting templates.

Taxon
Plantt0
Outcome
assembling the viral RNA replication complex, selecting and recruiting viral RNA replication templates, activating the viral complex for RNA synthesise0
Qualifier
host factorse0

Not reportedDirection

Verbatim

e0

“Recent data show that host factors play important roles in assembling the viral RNA replication complex, selecting and recruiting viral RNA replication templates, activating the viral complex for RNA synthesis, and the other steps.”

✓ located verbatim in the source · abstract, characters 716–947
t0

“Plant RNA Viruses”

✓ located verbatim in the source · title, characters 54–71

Title

The Importance of Host Factors for the Replication of Plant RNA Viruses

Mi-Ri Park; Kook-Hyung Kim Research in Plant Disease 2005. doi:10.5423/rpd.2005.11.2.098

Other claims from this paper (4)
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Mutations from viral polymerase error arise at a constant rate, but most new mutants are sequestered in virions and are not replication templates.

Outcome
mutations arising by viral polymerase errore4
Qualifier
most newly generated mutants are sequestered in virions and do not serve as replication templatese4

Verbatim

e3

“to establish three lineages each in wheat, corn, and barley”

✓ located verbatim in the source · abstract, characters 462–521
e4

“mutations arising by viral polymerase error are generated at a constant rate but that most newly generated mutants are sequestered in virions and do not serve as replication templates”

✓ located verbatim in the source · abstract, characters 1384–1567

Title

Structure and Temporal Dynamics of Populations within Wheat Streak Mosaic Virus Isolates

Jeffrey S. Hall; Roy French; T. Jack Morris; et al. Journal of Virology 2001. doi:10.1128/jvi.75.21.10231-10243.2001

Other claims from this paper (9)
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Discontinuous RNA replication, with the replicase switching templates, may generate RNA diversity.

Taxon
local lesion hoste0
Outcome
RNA diversitye5
Qualifier
discontinuous RNA replicatione5

Verbatim

e0

“Pairs of BMV RNA3 variants carrying marker mutations at different locations were coinoculated on a local lesion host, and the progeny RNA3 in a large number of lesions was analyzed”

✓ located verbatim in the source · abstract, characters 179–359
e5

“Our results suggest discontinuous RNA replication, with the replicase changing among the homologous RNA templates and generating RNA diversity”

✓ located verbatim in the source · abstract, characters 993–1135

Title

Frequent Homologous Recombination Events between Molecules of One RNA Component in a Multipartite RNA Virus

A. Bruyere; M. Wantroba; S. Flasinski; et al. Journal of Virology 2000. doi:10.1128/jvi.74.9.4214-4219.2000

Other claims from this paper (6)

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