Search claims · PlantClaims

Associationobservedoriginal resultmeasured

Claim · model-written summary

Transcriptome changes correlated with water content, biomass, and cellulose crystallinity changes.

Organ / stage: leafe0
Outcome: changes of relative water content, biomass accumulation, and cellulose crystal degreee0
Qualifier: transcriptome transformationse0

Not reportedTaxonDirection

Verbatim

e0
“leaf distal. Those transcriptome transformations correlated well with the changes of relative water content, biomass accumulation, and cellulose crystal degree”
✓ located verbatim in the source · abstract, characters 1177–1336

Title

Characterization of the development dynamics within the linear growth bamboo leaf

Zhipeng Gao; Lin Guo; Ming Chen; et al. Physiologia Plantarum 2021. doi:10.1111/ppl.13346

Other claims from this paper (8)

Observation Linear leaf growth had three zones.
Observation The basal division zone was about 1 cm and contained about 1580 cells.
Observation The elongation zone was about 3 cm and contained about 1905 cells.
Observation Cell elongation was complete in the mature zone.
Observation Division zone cell production was 25.33 to 35.81 cells per hour.
Observation The cell division rate was about 0.45 cells per cell per 24 hours.
Method / resource Transcriptome sequencing found 21 933 unigenes in leaf growth zones.
Observation Transcript functions shifted along the leaf from division to elongation and other distal processes.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Poplar transcriptome data showed dynamic gene and miRNA changes during leaf development.

Taxon: poplarPopuluse0
Organ / stage: leavese0
Outcome: dynamic changes in genes and miRNAse0

Verbatim

e0
“Spatiotemporal transcriptome data of poplar leaves revealed dynamic changes in genes and miRNAs during leaf development”
✓ located verbatim in the source · abstract, characters 1303–1422

Title

Spatiotemporal miRNA and transcriptomic network dynamically regulate the developmental and senescence processes of poplar leaves

Kang Du; Shenxiu Jiang; Hao Chen; et al. Horticulture Research 2023. doi:10.1093/hr/uhad186

Other claims from this paper (4)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Ralstonia invasion changed the tobacco leaf transcriptome.

Taxon: tobaccoNicotiana tabacume0
Treatment: Ralstonia solanacearum invasione0
Interactor: Ralstonia solanacearumRalstonia solanacearume0pathogen
Outcome: leaf transcriptome changese0

Not reportedComparatorDirection

Verbatim

e0
“Ralstonia solanacearum invasion caused rhizosphere microbiome and leaf transcriptome changes in tobacco”
✓ located verbatim in the source · abstract, characters 1662–1765

Title

Resistance against Ralstonia solanacearum of tobacco depends on specific root-associated bacterial consortium and phenylpropanoid metabolic pathway

Keke Yu; Xianchao Shang; Liping Zhao; et al. Environmental Technology & Innovation 2025. doi:10.1016/j.eti.2025.104603

Other claims from this paper (10)

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

P. mediterranea pretreatment reduced lemon leaf transcriptome changes.

Taxon: lemonCitrus ×limone1
Treatment: P. mediterranea pretreatmente1
Interactor: P. mediterraneaPseudomonas mediterraneae1biocontrol_agent
Outcome: lemon leaf transcriptome modificationse1
Direction: strongly reducede1

Not reportedComparator

Verbatim

e0
“lemon [Citrus limon (L.) Burm. f.]”
✓ located verbatim in the source · abstract, characters 276–310

e1
“P. mediterranea pretreatment strongly reduced lemon leaf transcriptome modifications”
✓ located verbatim in the source · abstract, characters 511–595

Title

Transcriptome analysis of lemon leaves ( Citrus limon ) infected by Plenodomus tracheiphilus reveals the effectiveness of Pseudomonas mediterranea in priming the plant response to mal secco disease

Angelo Sicilia; Vittoria Catara; Giulio Dimaria; et al. Journal of Plant Interactions 2023. doi:10.1080/17429145.2023.2243097

Other claims from this paper (4)

Observation Plenodomus tracheiphilus markedly reprogrammed the lemon transcriptome.
Intervention effect P. mediterranea pretreatment limited fungal DNA in lemon tissue.
Intervention effect P. mediterranea prevented downregulation of effector-triggered immunity genes.
Intervention effect P. mediterranea prevented deregulation of phytohormone biosynthesis and perception genes.

Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

Stress conditions caused substantial changes in the hop transcriptome.

Taxon: hopt0
Treatment: stress conditionse0
Outcome: transcriptomee0
Direction: changese0

Not reportedComparator

Verbatim

e0
“The stress conditions imposed in these experiments caused substantial changes to the transcriptome”
✓ located verbatim in the source · abstract, characters 553–651

t0
“hop (Humulus lupulus L.)”
✓ located verbatim in the source · title, characters 57–81

Title

Gene expression for secondary metabolite biosynthesis in hop (Humulus lupulus L.) leaf lupulin glands exposed to heat and low-water stress

Renée L. Eriksen; Lillian K. Padgitt-Cobb; M. Shaun Townsend; et al. Scientific Reports 2021. doi:10.1038/s41598-021-84691-y

Other claims from this paper (4)

Intervention effect Stress conditions significantly reduced expression of numerous hop genes involved in secondary metabolite biosynthesis.
Intervention effect Valerophenone synthase expression was significantly reduced across stress treatments.
Observation The authors identified hop transcripts homologous to genes affecting abiotic stress tolerance in other plants.
Method / resource The authors provide the first hop root transcriptome.

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Water deficit changed drought stress signaling molecules and the leaf transcriptome.

Taxon: tomatoSolanum lycopersicume0
Treatment: Water deficite2
Outcome: drought stress-related signaling molecules and in the leaf transcriptomee2

Not reportedComparatorDirection

Verbatim

e0
“tomato cultivar”
✓ located verbatim in the source · abstract, characters 981–996

e2
“Water deficit induced extensive changes in drought stress-related signaling molecules and in the leaf transcriptome”
✓ located verbatim in the source · abstract, characters 1328–1443

Title

Molecular changes promoted by long-term water deficit in tomato can be largely mitigated by a fungal biostimulant

Lidia López-Serrano; Alberto Férez-Gómez; Remedios Romero-Aranda; et al. Plant Stress 2026. doi:10.1016/j.stress.2026.101412

Other claims from this paper (5)

Intervention effect Fungal filtrate enhanced tomato fruit yield under long-term water deficit.
Intervention effect Fungal filtrate enhanced tomato root growth under long-term water deficit.
Intervention effect Fungal filtrate enhanced photosynthetic performance and agronomic water use efficiency under long-term water deficit.
Intervention effect Fungal filtrate alleviated many water-deficit responses, including expression of approximately 50% of responsive genes.
Intervention effect Water-deficit-responsive genes did not respond to filtrate under optimal irrigation.

Observationobservedoriginal resultmeasured

Claim · model-written summary

OsBIC1 and OsCRYs produced similar transcriptome changes in the GA responsive pathway.

Taxon: riceOryza sativat0
Gene: OsBIC1 and OsCRYse0
Outcome: similar transcriptome changese0
Qualifier: Gibberellic Acids (GA)-responsive pathwaye0

Verbatim

e0
“OsBIC1 and OsCRYs regulated similar transcriptome changes in regulating Gibberellic Acids (GA)-responsive pathway”
✓ located verbatim in the source · abstract, characters 1378–1491

t0
“rice (Oryza sativa)”
✓ located verbatim in the source · abstract, characters 646–665

Title

OsBIC1 Directly Interacts with OsCRYs to Regulate Leaf Sheath Length through Mediating GA-Responsive Pathway

Cong Li; Xin Wang; Liya Zhang; et al. International Journal of Molecular Sciences 2021. doi:10.3390/ijms23010287

Other claims from this paper (7)

Observation OsBIC1 and OsBIC2 were identified as rice homologues of Arabidopsis BIC genes.
Intervention effect Overexpression of OsBIC1 increased leaf sheath length.
Intervention effect Overexpression of OsBIC2 increased leaf sheath length.
Intervention effect OsBIC1 mutation shortened the leaf sheath in a blue light dependent manner.
Mechanism OsBIC1 directly interacts with OsCRY1a, OsCRY1b and OsCRY2 in regulating sheath elongation.
Mechanism OsBIC1 and OsCRYs affected the distribution of epidermal cell lengths in the second sheath.
Mechanism The authors inferred joint regulation of epidermal elongation and light induced sheath elongation through the GA pathway.

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The findings indicate iron scarcity triggers leaf transcriptome reprogramming.

Taxon: ArabidopsisArabidopsist0
Outcome: reprogramming of the transcriptome in leavese0
Qualifier: Fe scarcity, not Fe utilizatione0

Verbatim

e0
“Fe scarcity, not Fe utilization, triggers reprogramming of the transcriptome in leaves”
✓ located verbatim in the source · abstract, characters 1667–1753

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 115–126

Title

Iron deficiency and the loss of chloroplast iron–sulfur cluster assembly trigger distinct transcriptome changes in Arabidopsis rosettes

Gretchen Elizabeth Kroh; Marinus Pilon Metallomics 2020. doi:10.1039/d0mt00175a

Other claims from this paper (8)

Intervention effect Iron deficiency affected a limited set of Arabidopsis genes, mainly those encoding chloroplast localized proteins.
Intervention effect A set of glutaredoxin transcripts was down-regulated early after iron deficiency.
Intervention effect RNAi down-regulation of glutaredoxin genes had minimal effect on chloroplast iron-deficiency marker proteins.
Observation AP2/ERF transcription factor binding motifs were the most abundant in promoters of differentially expressed genes.
Intervention effect Three AP2/ERF transcription factors were differentially expressed early after low iron treatment.
Observation Low iron wild type and sufb-RNAi knockdown had little overlap in differentially expressed genes.
Observation sufb-RNAi produced gene expression patterns expected for iron excess.
Intervention effect sufb-RNAi up-regulated a transcript for an iron-sulfur assembly component unaffected by low iron.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Mg induced more transcriptome changes in leaves than in roots.

Taxon: riceOryza sativae0
Organ / stage: leavese5
Treatment: Mge5
Outcome: changese5
Direction: moree5

Verbatim

e0
“Iron (Fe) toxicity is a widespread nutritional disorder in lowland rice”
✓ located verbatim in the source · abstract, characters 14–85

e5
“An RNA-seq analysis revealed that Mg induced more changes in leaves than roots”
✓ located verbatim in the source · abstract, characters 1235–1313

Title

Magnesium supply alleviates iron toxicity-induced leaf bronzing in rice through exclusion and tissue-tolerance mechanisms

Toavintsoa Rajonandraina; Yoshiaki Ueda; Matthias Wissuwa; et al. Frontiers in Plant Science 2023. doi:10.3389/fpls.2023.1213456

Other claims from this paper (10)

Intervention effect Addition of Mg decreased leaf bronzing under field and hydroponic conditions.
Intervention effect Potassium addition had only minor effects on leaf bronzing.
Intervention effect Plants treated with Mg tended to have smaller shoot Fe concentrations in the field.
Mechanism Mg supply may enhance Fe exclusion at the whole-plant level.
Association Fe toxicity symptoms were mitigated in multiple genotypes.
Association Fe toxicity symptoms were mitigated without a concomitant decrease of Fe concentration in multiple genotypes.
Mechanism Increased Mg supply may confer tolerance at the tissue level.
Association NAC transcription factor binding sites were enriched in genes induced by Fe toxicity in leaves.
Association Addition of Mg caused non-significant enrichment of the same NAC binding sites.
Mechanism NAC family proteins may mediate the effect of Mg on rice.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The leaf transcriptome changed dramatically from the second to third leaf stage and from the fourth to fifth leaf stage.

Taxon: common wheatTriticum aestivume0
Organ / stage: from the second to third leaf stagese4
Outcome: transcriptome profilese4

Verbatim

e0
“in the common wheat cultivar Norin 61”
✓ located verbatim in the source · abstract, characters 461–498

e4
“transcriptome profiles dramatically changed from the second to third leaf stages and from the fourth to fifth leaf stages”
✓ located verbatim in the source · abstract, characters 916–1037

Title

Juvenile-to-adult phase transition in a common wheat cultivar Norin 61, and accompanying changes in leaf transcriptome

Kanata Senoo; Shunsuke Yoshioka; Koichi Yamamori; et al. Plant and Cell Physiology 2025. doi:10.1093/pcp/pcaf034

Other claims from this paper (5)

“leaf transcriptome changes”

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