Search claims · PlantClaims

Observationobservedoriginal resultmeasured

Claim · model-written summary

Phenylpropanoid pathway genes showed a defined transcript accumulation pattern during latewood formation.

Organ / stage: latewoode0
Gene: genes involved in the phenylpropanoid pathwaye0
Outcome: RNA accumulation patterne0

Not reportedTaxon

Verbatim

e0
“a well-defined RNA accumulation pattern of genes involved in the phenylpropanoid pathway during latewood formation.”
✓ located verbatim in the source · abstract, characters 749–864

Title

Transcript Accumulation Dynamics of Phenylpropanoid Pathway Genes in the Maturing Xylem and Phloem of Picea abies during Latewood Formation

Giovanni Emiliani; Maria Laura Traversi; Monica Anichini; et al. Journal of Integrative Plant Biology 2011. doi:10.1111/j.1744-7909.2011.01069.x

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

bHLH142 transcript and protein accumulation had temporally different patterns.

Taxon: riceOryza sativat0
Gene: bHLH142e0
Outcome: Temporally dissimilar pattern of bHLH142 transcript and polypeptide accumulatione0

Verbatim

e0
“Temporally dissimilar pattern of bHLH142 transcript and polypeptide accumulation”
✓ located verbatim in the source · abstract, characters 530–610

t0
“rice”
✓ located verbatim in the source · title, characters 112–116

Title

bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice

Rajeev Ranjan; Reema Khurana; Naveen Malik; et al. Scientific Reports 2017. doi:10.1038/srep43397

Other claims from this paper (5)

Intervention effect bHLH142 overexpression produced indehiscent anthers.
Intervention effect bHLH142 overexpression produced aborted pollen grains.
Mechanism Failed septum and stomium rupture caused anther indehiscence.
Mechanism Abnormal tapetum degeneration was attributed as the cause of pollen abortion.
Mechanism Transcriptome analysis suggested bHLH142 may regulate carbohydrate and lipid metabolism, cell wall modification, ROS homeostasis, and cell death genes.

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The pattern of transcript accumulation suggests that PGL apple seedlings alter many physiological and metabolic processes such as sorbitol metabolism, osmoprotectant production and abscisic acid activity.

Taxon: appleMalus domesticat0
Material: PGL seedlingse0
Outcome: physiological and metabolic processese0
Qualifier: pattern of transcript accumulation suggestse0

Verbatim

e0
“This pattern of transcript accumulation suggests PGL seedlings alter many physiological and metabolic processes such as sorbitol metabolism, osmoprotectant production, and abscisic acid activity”
✓ located verbatim in the source · abstract, characters 900–1094

t0
“apple”
✓ located verbatim in the source · title, characters 70–75

Title

High-throughput sequencing reveals that pale green lethal disorder in apple (Malus) stimulates stress responses and affects senescence

Benjamin Orcheski; Susan Brown Tree Genetics & Genomes 2016. doi:10.1007/s11295-016-1097-5

Other claims from this paper (2)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Arath;WEE1 expression altered native WEE1 transcript accumulation through the cell cycle.

Treatment: Arath;WEE1 expressione0
Gene: native WEE1e0
Outcome: pattern of native WEE1 transcript accumulatione0
Direction: alterede0

Not reportedTaxonComparator

Verbatim

e0
“the pattern of native WEE1 transcript accumulation through the cell cycle was altered by Arath;WEE1 expression, suggesting feedback inhibition of native WEE1 transcription.”
✓ located verbatim in the source · abstract, characters 1145–1317

Title

Expression of Arabidopsis WEE1 in tobacco induces unexpected morphological and developmental changes

Ilario Siciliano; Anne Lentz Grønlund; Hana Ševčíková; et al. Scientific Reports 2019. doi:10.1038/s41598-019-45015-3

Other claims from this paper (7)

Intervention effect Arath;WEE1 expression in tobacco caused precocious flowering.
Intervention effect Arath;WEE1 expression in tobacco caused increased shoot morphogenesis.
Intervention effect Arath;WEE1 expression in tobacco caused reduced cell size.
Observation WEE1 protein levels fell prematurely.
Observation CDKB levels rose prematurely.
Intervention effect WEE1 transcript levels were not reduced in BY2 lines expressing Arath;WEE1.
Mechanism The authors infer feedback inhibition of native WEE1 transcription.

Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Fruit-development transcript pattern was consistent with hexokinase activity and conducive to hexose accumulation in mature fruit.

Taxon: LoquatEriobotrya japonicat0
Organ / stage: fruite0
Gene: hexokinasee0
Outcome: hexose accumulation in mature fruitse0

Not reportedDirection

Verbatim

t0
“Loquat (Eriobotrya japonica Lindl.)”
✓ located verbatim in the source · title, characters 66–101

e0
“which is consistent with hexokinase enzyme activity during fruit development and conducive for hexose accumulation in mature fruits”
✓ located verbatim in the source · abstract, characters 953–1084

Title

Isolation and Characterization of a Gene Encoding Hexokinase from Loquat (Eriobotrya japonica Lindl.)

Qiaoping Qin; Lanlan Zhang; Kai Xu; et al. Horticultural Science and Technology 2012. doi:10.7235/hort.2012.12024

Other claims from this paper (9)

Observation A full-length loquat hexokinase cDNA was isolated and named EjHXK1.
Observation EjHXK1 is 1,839 bp long.
Observation EjHXK1 encodes 497 amino acids.
Observation Predicted EjHXK1 protein shares 72%-81% similarity with other plant hexokinases.
Observation EjHXK1 is phylogenetically close to maize and rice hexokinases.
Observation Transient EjHXK1-GFP expression localized to the cell membrane and cytoplasm.
Observation EjHXK1 is expressed in loquat leaves, stems, flowers, and fruits.
Observation EjHXK1 transcripts were higher early in fruit development and decreased before maturation.
Mechanism The authors infer that EjHXK1 may regulate sugar flux during fruit ripening.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Erysiphe challenge enhanced pea lignin pathway transcript accumulation.

Taxon: peaLathyrus oleraceuse0
Treatment: E. pisi challengee0
Interactor: E. pisiErysiphe pisie0pathogen
Outcome: Transcript accumulation patterne0
Direction: enhancede0

Not reportedComparator

Verbatim

t0
“Pea”
✓ located verbatim in the source · title, characters 86–89

e0
“Transcript accumulation pattern of some vital genes in the lignin biosynthetic pathway in pea under E. pisi challenge indicated enhanced activation of the pathway”
✓ located verbatim in the source · abstract, characters 526–688

Title

Trichoderma asperellum (T42) and Pseudomonas fluorescens (OKC)-Enhances Resistance of Pea against Erysiphe pisi through Enhanced ROS Generation and Lignifications

Jai S. Patel; Ravindra N. Kharwar; Harikesh B. Singh; et al. Frontiers in Microbiology 2017. doi:10.3389/fmicb.2017.00306

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The two gene transcripts had overlapping organ patterns with differing relative accumulation.

Taxon: Glycine maxGlycine maxe1
Gene: GmGDH1 and GmGDH2e1
Outcome: overlapping gene transcript accumulation pattern with differences in relative gene transcript accumulatione0

Verbatim

e0
“an overlapping gene transcript accumulation pattern with differences in relative gene transcript accumulation in the organs examined.”
✓ located verbatim in the source · abstract, characters 427–560

e1
“two Glycine max sequences, GmGDH1 and GmGDH2”
✓ located verbatim in the source · abstract, characters 170–214

Title

Gene transcript accumulation and in situ mRNA hybridization of two putative glutamate dehydrogenase genes in etiolatedGlycine maxseedlings

M Dimou; G Tsaniklidis; G Aivalakis; et al. Biotechnic & Histochemistry 2015. doi:10.3109/10520295.2015.1020875

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three major immuno-reactive bands accumulated in a pattern that mirrored the IRIP transcript.

Taxon: Deschampsia antarcticaDeschampsia antarcticae0
Outcome: immuno-reactive bandse2
Value: three majore2
Qualifier: pattern of accumulation mirrored that of transcripte2

Verbatim

e0
“The cryophilic Antarctic hair grass, Deschampsia antarctica E. Desv., one of two higher plants indigenous to Antarctica”
✓ located verbatim in the source · abstract, characters 0–119

e2
“Western analysis detected three major immuno-reactive bands whose pattern of accumulation mirrored that of transcript”
✓ located verbatim in the source · abstract, characters 914–1031

Title

Cold acclimation induces rapid and dynamic changes in freeze tolerance mechanisms in the cryophile Deschampsia antarctica E. Desv.

ORINDA CHEW; SUZANNE LELEAN; ULRIK P. JOHN; et al. Plant Cell & Environment 2011. doi:10.1111/j.1365-3040.2011.02456.x

Other claims from this paper (5)

Intervention effect Cold acclimation significantly increased IRIP transcript levels within hours, up to 1000-fold in fully acclimated plants.
Intervention effect IRIP transcript levels decreased within hours of de-acclimation.
Association The onset and decline of RI activity correlated with the IRIP transcript pattern in acclimated and de-acclimated leaves.
Intervention effect Cold acclimation enhanced freeze tolerance by 5 °C within 4 d.
Intervention effect Sub-zero acclimation increased freeze tolerance by an additional 3 °C relative to cold acclimation.

Associationobservedoriginal resultmeasured

Claim · model-written summary

The CsULT1 expression pattern corroborated the accumulation pattern of crocin.

Taxon: CrocusCrocust0
Gene: CsULT1e1
Outcome: accumulation pattern of crocine0

Not reportedDirection

Verbatim

e0
“which corroborated with the accumulation pattern of crocin”
✓ located verbatim in the source · abstract, characters 945–1003

e1
“The CsULT1 transcript”
✓ located verbatim in the source · abstract, characters 786–807

t0
“Crocus”
✓ located verbatim in the source · title, characters 96–102

Title

Identification, cloning and characterization of an ultrapetala transcription factor CsULT1 from Crocus: a novel regulator of apocarotenoid biosynthesis

Nasheeman Ashraf; Deepti Jain; Ram A Vishwakarma BMC Plant Biology 2015. doi:10.1186/s12870-015-0423-7

Other claims from this paper (9)

Observation The CsULT1 gene contains an 80 amino acid long conserved SAND domain.
Observation The CsULT1 transcript was more abundant in stigma.
Observation CsULT1 expression increased from the pre anthesis stage till anthesis.
Observation CsULT1 was transcriptionally active and localized in the nucleus.
Intervention effect CsULT1 expression was induced by the phytohormones auxin, methyljasmonate and salicylic acid.
Intervention effect Overexpression of CsULT1 in Crocus calli enhanced expression of the pathway genes PSY, PDS and BCH.
Intervention effect Overexpression of CsULT1 in Crocus calli enhanced expression of the carotenoid cleavage dioxygenase genes.
Mechanism The authors suggest that CsULT1 is a novel regulator of Crocus apocarotenoid biosynthesis.
Mechanism The authors show involvement of plant SAND domain proteins in regulating secondary metabolic pathways.

Associationobservedoriginal resultmeasured

Claim · model-written summary

LHCB1 transcript accumulation over time differed between gun1 and wild-type seedlings.

Taxon: ArabidopsisArabidopsist0
Material: gun1e0
Gene: LHCB1e0
Outcome: temporal pattern of accumulation of LHCB1 transcriptse0
Comparator: wild-typee0

Not reportedDirection

Verbatim

e0
“The temporal pattern of accumulation of LHCB1 transcripts differed between wild-type and gun1 seedlings”
✓ located verbatim in the source · abstract, characters 806–909

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 4–15

Title

The Arabidopsis plastid-signalling mutant gun1 (genomes uncoupled1) shows altered sensitivity to sucrose and abscisic acid and alterations in early seedling development

A. Cottage; E. K. Mott; J. A. Kempster; et al. Journal of Experimental Botany 2010. doi:10.1093/jxb/erq186

Other claims from this paper (11)

Association gun1 seedlings accumulated less anthocyanin than wild type with 2% sucrose.
Association gun1 had fewer transcripts of early anthocyanin biosynthesis genes.
Intervention effect Norflurazon further reduced anthocyanin content in sucrose-treated seedlings.
Intervention effect Lincomycin further reduced anthocyanin content in sucrose-treated seedlings.
Intervention effect Norflurazon altered the timing of anthocyanin accumulation.
Intervention effect Lincomycin altered the timing of anthocyanin accumulation.
Intervention effect Lincomycin changed spatial distribution of sucrose-induced anthocyanin accumulation.
Association gun1 seedlings showed greater sensitivity to sucrose suppression of LHCB1 transcripts.
Association gun1 growth and development were more sucrose-sensitive than wild type.
Association With lincomycin, gun1 cotyledon expansion was enhanced relative to wild type.
Association gun1 seedling growth and development were more sensitive to abscisic acid inhibition than wild type.

“transcript accumulation pattern”

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