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“sequence types”

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Taxon groups are the verbatim names found in the abstracts (case-insensitive), not normalised: maize, corn and Zea mays are separate groups here. The Organism view merges them through NCBI Taxonomy.

not stated 40

Observationobservedoriginal resultmeasured

Claim · model-written summary

Only six sequence types were found in the species.

Outcome
sequence typese0
Value
sixe0

Not reportedTaxon

Verbatim

e0

“there was only a limited number (six) of sequence types in this species”

✓ located verbatim in the source · abstract, characters 843–914

Title

Intragenic Recombination in the Adh Locws of the Wild Plant Arabidopsis thaliana

印南, 秀樹; INNAN, Hideki; TAJIMA, Fumio; et al. Institutional Repositories DataBase (IRDB) 1996

Other claims from this paper (6)
Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

No additional sequence types were found worldwide.

Outcome
multilocus sequence types (STs)e0
Comparator
worldwidee0

Not reportedTaxonValue

Verbatim

e0

“no additional multilocus sequence types (STs) were identified worldwide”

✓ located verbatim in the source · abstract, characters 934–1005

Title

Update of the Xylella spp. host plant database – Systematic literature search up to 30 June 2025

European Food Safety Authority (EFSA); Vincenzo Cavalieri; Elisa Fasanelli; et al. EFSA Journal 2026. doi:10.2903/j.efsa.2026.9840

Other claims from this paper (11)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nineteen AMF sequence types were distinguished.

Interactor
GlomusGlomuse0symbiont
Outcome
discrete sequence typese0
Value
Nineteene0

Not reportedTaxon

Verbatim

e0

“Nineteen discrete sequence types belonging to Glomus groups A and B and to the genus Acaulospora were distinguished.”

✓ located verbatim in the source · abstract, characters 695–811

Title

Seasonal Dynamics of Arbuscular Mycorrhizal Fungal Communities in Roots in a Seminatural Grassland

Juan C. Santos-González; Roger D. Finlay; Anders Tehler Applied and Environmental Microbiology 2007. doi:10.1128/aem.00262-07

Other claims from this paper (5)

Arabidopsis thaliana 33

Show all 33 →
Observationobservedoriginal resultmeasured

Claim · model-written summary

Intragenic recombinations among the divergent sequence types generated four recombinant sequence types.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Outcome
recombinant sequence typese1
Value
foure1

Verbatim

t0

“the wild plant Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 94–129
e1

“Intragenic recombinations among the divergent sequence types generated four recombinant sequence types”

✓ located verbatim in the source · abstract, characters 384–486

Title

Trimorphic DNA variation in the receptor-like protein kinase gene in the F18L15-130 region of the wild plant Arabidopsis thaliana.

Naohiko T. Miyashita Genes & Genetic Systems 2003. doi:10.1266/ggs.78.221

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Only six sequence types were found.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Outcome
sequence typese0
Value
sixe0

Verbatim

e0

“there was only a limited number (six) of sequence types in this species”

✓ located verbatim in the source · abstract, characters 871–942
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 60–80

Title

Intragenic Recombination in the Adh Locws of the Wild Plant Arabidopsis thaliana

Hideki Innan; Fumio Tajima; Ryohei Terauchi; et al. Genetics 1996. doi:10.1093/genetics/143.4.1761

Other claims from this paper (7)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Sequence analysis of all plant ascorbate peroxidases gave a classification into seven types.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Outcome
classificatione2
Value
seven typest0

Verbatim

e0

“Database analyses retrieved 52 expressed sequence tags coding for Arabidopsis thaliana ascorbate peroxidases”

✓ located verbatim in the source · abstract, characters 114–222
e2

“Analysis of sequence data available for all plant ascorbate peroxidases resulted in the following classification”

✓ located verbatim in the source · abstract, characters 369–481
t0

“seven types of ascorbate peroxidase”

✓ located verbatim in the source · title, characters 126–161

Title

From sequence analysis of three novel ascorbate peroxidases from Arabidopsis thaliana to structure, function and evolution of seven types of ascorbate peroxidase

Hans M. JESPERSEN; Inger V. H. KJÆRSGÅRD; Lars ØSTERGAARD; et al. Biochemical Journal 1997. doi:10.1042/bj3260305

Other claims from this paper (8)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Typing clustered 27 isolates into 17 sequence types and two clonal complexes.

Outcome
17 sequence types (STs) segregated into two clonal-complexes (CC)e0
Value
17 sequence types (STs)e0

Verbatim

e0

“clustered 27 isolates into 17 sequence types (STs) segregated into two clonal-complexes (CC)”

✓ located verbatim in the source · abstract, characters 791–883
t0

“rice”

✓ located verbatim in the source · title, characters 28–32

Title

Intra‐regional diversity of rice bacterial blight pathogen,Xanthomonas oryzaepv.oryzae, in the Andaman Islands, India: revelation by pathotyping and multilocus sequence typing

K. Sakthivel; A. Kumar; R.K. Gautam; et al. Journal of Applied Microbiology 2020. doi:10.1111/jam.14813

Other claims from this paper (11)
Observationobservedoriginal resultmeasured

Claim · model-written summary

OsPCR1 amino acid sequence varied between japonica and indica rice types.

Material
japonica and indica rice typese0
Gene
OsPCR1e0
Outcome
variation in the OsPCR1 amino acid sequencee0

Verbatim

e0

“We identified some variation in the OsPCR1 amino acid sequence between the japonica and indica rice types using 15 different rice varieties”

✓ located verbatim in the source · abstract, characters 1257–1396

Title

Rice PCR1 affects grain weight and zinc accumulation

Hyun‐Sook Lee; Won‐Yong Song; Sang-Nag Ahn 2015

Other claims from this paper (10)
Observationobservedoriginal resultmeasured

Claim · model-written summary

OsHXKs were divided into three types by N-terminal sequence.

Gene
OsHXKse0
Outcome
three types (A, B, C)e0

Verbatim

e0

“OsHXKs were clearly divided into three types (A, B, C) based on their N-terminal sequences.”

✓ located verbatim in the source · abstract, characters 486–577
e1

“HXK gene family in rice”

✓ located verbatim in the source · abstract, characters 129–152

Title

Subcellular localization of rice hexokinase (OsHXK) family members in the mesophyll protoplasts of tobacco

W. Cheng; H. Zhang; X. Zhou; et al. Biologia Plantarum 2011. doi:10.1007/s10535-011-0025-7

Other claims from this paper (8)
Observationobservedoriginal resultmeasured

Claim · model-written summary

The wheat clones fell into five deduced amino-acid sequence types.

Gene
MADS box genest0
Outcome
five types on the deduced amino acid sequencee0
Value
five typese0

Not reportedDirection

Verbatim

e0

“five types on the deduced amino acid sequence”

✓ located verbatim in the source · abstract, characters 351–396
t0

“Wheat MADS box genes”

✓ located verbatim in the source · title, characters 0–20

Title

Wheat MADS box genes, a multigene family dispersed throughout the genome.

Koji Murai; Rika Murai; Yasunari Ogihara Genes & Genetic Systems 1997. doi:10.1266/ggs.72.317

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Multilocus sequence typing assigned the X. translucens strains to four sequence types, three of which were previously reported globally.

Interactor
XanthomonasXanthomonast0pathogen
Outcome
assigned to four different sequence typese0

Verbatim

e0

“Strains were assigned to four different sequence types, three of which were previously reported globally”

✓ located verbatim in the source · abstract, characters 847–951
t0

“Xanthomonas Species Pathogenic in Wheat in Uruguay”

✓ located verbatim in the source · title, characters 43–93

Title

Genetic and Phenotypic Characterization of Xanthomonas Species Pathogenic in Wheat in Uruguay

Felipe Clavijo; Rebecca D. Curland; Valentina Croce; et al. Phytopathology 2021. doi:10.1094/phyto-06-21-0231-r

Other claims from this paper (8)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Eleven wheat clones fell into seven nucleotide-sequence types.

Gene
MADS box genest0
Outcome
seven types on the basis of the nucleotide sequencee0
Value
seven typese0

Not reportedDirection

Verbatim

e0

“Eleven individual clones sequenced were classified into seven types on the basis of the nucleotide sequence”

✓ located verbatim in the source · abstract, characters 239–346
t0

“Wheat MADS box genes”

✓ located verbatim in the source · title, characters 0–20

Title

Wheat MADS box genes, a multigene family dispersed throughout the genome.

Koji Murai; Rika Murai; Yasunari Ogihara Genes & Genetic Systems 1997. doi:10.1266/ggs.72.317

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

All identified AM fungal sequence types belonged to Glomus.

Taxon
maizeZea mayst0
Interactor
GlomusGlomuse0
Outcome
sequence types we found belonging to the Glomus cladee0

Verbatim

e0

“All of sequence types we found belonging to the Glomus clade”

✓ located verbatim in the source · abstract, characters 752–812
t0

“maize monocrop”

✓ located verbatim in the source · title, characters 110–124

Title

Effect of different plant densities on the diversity of arbuscular mycorrhizal fungi community in a long-term maize monocrop system

Z. Sasvári; K. Posta Spanish Journal of Agricultural Research 2010. doi:10.5424/sjar/201008s1-1231

Other claims from this paper (4)
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Legume-maize sequence and rhizobial inoculation significantly increased maize grain yields in the three soil types.

Taxon
maizeZea mayse0
Treatment
Legume-maize sequence and rhizobial inoculatione0
Interactor
rhizobial straine1symbiont
Outcome
grain yieldse0
Direction
increasede0
Setting
three soil typese0

Not reportedComparator

Verbatim

e0

“Legume-maize sequence and rhizobial inoculation significantly (P < .05) increased grain yields of maize in the three soil types”

✓ located verbatim in the source · abstract, characters 746–873
e1

“Maize yield response to legume inoculation with indigenous rhizobial strain in a legume-maize sequence”

✓ located verbatim in the source · abstract, characters 118–220

Title

Maize Responses to Legume Inoculation in Legume-Maize Rotation on Three Types of Soil in Southwestern, Nigeria

Abisoye Oyepero Ojo; Michael Olajire Dare; Akinloye Adams Olosunde; et al. International Journal of Research and Innovation in Applied Science 2024. doi:10.51584/ijrias.2024.911021

Other claims from this paper (4)
Observationobservedoriginal resultmeasured

Claim · model-written summary

The upstream sequence contained cis-element motifs and two anther/pollen promoter element types.

Taxon
maizeZea mayse1
Outcome
cis-element motifs and two types of anther/pollen-specific promoter elementse0
Value
2100 bpe0

Verbatim

e0

“The sequence analysis of 2100 bp upstream from the start codon ATG has shown that it contains cis-element motifs and two types of anther/pollen-specific promoter elements (GTGA and AGAAA)”

✓ located verbatim in the source · abstract, characters 107–294
e1

“gene in maize”

✓ located verbatim in the source · abstract, characters 92–105

Title

Isolation and characterization of a novel pollen-specific promoter in maize (Zea mays L.)

He Wang; Mingxia Fan; Guohong Wang; et al. Genome 2017. doi:10.1139/gen-2016-0089

Other claims from this paper (3)
Observationobservedoriginal resultmeasured

Claim · model-written summary

The sequence types in polymorphic AFLP bands reflected the organisation of the barley genome

Outcome
types of sequences present in the polymorphic bandse0
Qualifier
reflected the organisation of the barley genomee0

Verbatim

e0

“The types of sequences present in the polymorphic bands reflected the organisation of the barley genome”

✓ located verbatim in the source · abstract, characters 1841–1944
t0

“barley genome”

✓ located verbatim in the source · title, characters 43–56

Title

Molecular analysis of point mutations in a barley genome exposed to MNU and gamma rays

Marzena Kurowska; Anna Labocha-Pawłowska; Dominika Gnizda; et al. Mutation research. Fundamental and molecular mechanisms of mutagenesis 2012. doi:10.1016/j.mrfmmm.2012.08.008

Other claims from this paper (11)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Barley RIP has sequence features divergent from other plant RIP types.

Gene
bRIPe0
Outcome
sequence featurese0

Verbatim

e0

“RIP from barley (bRIP) is a type I RIP and has sequence features that are divergent from those of type I and type II RIPs from dicotyledonous plants and even the type III RIP from maize”

✓ located verbatim in the source · abstract, characters 151–336

Title

Structures of the ribosome-inactivating protein from barley seeds reveal a unique activation mechanism

Byung-Gil Lee; Min Kyung Kim; Byeong-Won Kim; et al. Acta Crystallographica Section D Biological Crystallography 2012. doi:10.1107/s0907444912037110

Other claims from this paper (4)
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

CHERIPIC was successfully validated on barley bulk segregant sequence data.

Outcome
successfully validated implementation of CHERIPICe0
Comparator
three different types of bulk segregant sequence datae0

Verbatim

e0

“We have successfully validated implementation of CHERIPIC using three different types of bulk segregant sequence data from Arabidopsis, maize and barley, respectively.”

✓ located verbatim in the source · abstract, characters 697–864

Title

Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence

Ghanasyam Rallapalli; Pilar Corredor-Moreno; Edward Chalstrey; et al. BMC Bioinformatics 2019. doi:10.1186/s12859-018-2515-5

Other claims from this paper (3)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Tomato isolates comprised 24 EF-1α sequence types.

Outcome
EF-1α gene sequence typese0
Value
24 EF-1α gene sequence typese0

Verbatim

e0

“Among the isolates from tomato, 24 EF-1α gene sequence types (EFST) were found”

✓ located verbatim in the source · abstract, characters 506–584

Title

Molecular phylogeny and diversity ofFusariumendophytes isolated from tomato stems

Iori Imazaki; Ikuo Kadota FEMS Microbiology Ecology 2015. doi:10.1093/femsec/fiv098

Other claims from this paper (6)
Observationobservedoriginal resultmeasured

Claim · model-written summary

The F. oxysporum population associated with tomato comprised 26 sequence types.

Interactor
F. oxysporumFusarium oxysporume3symbiont
Outcome
sequence typese1
Value
26e1

Verbatim

e1

“A diverse population of 26 sequence types was found, although two sequence types represented nearly two-thirds of the isolates studied”

✓ located verbatim in the source · abstract, characters 712–846
e2

“from a total of 32 asymptomatic tomato plants in two fields”

✓ located verbatim in the source · abstract, characters 305–364
e3

“A total of 609 isolates of F. oxysporum were obtained”

✓ located verbatim in the source · abstract, characters 237–290

Title

Highly Diverse Endophytic and Soil Fusarium oxysporum Populations Associated with Field-Grown Tomato Plants

Jill E. Demers; Beth K. Gugino; María del Mar Jiménez-Gasco Applied and Environmental Microbiology 2014. doi:10.1128/aem.02590-14

Other claims from this paper (8)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Multiple sequence types were found in every tomato plant, averaging 4.2 per plant.

Outcome
Multiple sequence types were found in all plantse1
Value
an average of 4.2 per plante1

Verbatim

e1

“Multiple sequence types were found in all plants, with an average of 4.2 per plant”

✓ located verbatim in the source · abstract, characters 980–1062
e2

“from a total of 32 asymptomatic tomato plants in two fields”

✓ located verbatim in the source · abstract, characters 305–364

Title

Highly Diverse Endophytic and Soil Fusarium oxysporum Populations Associated with Field-Grown Tomato Plants

Jill E. Demers; Beth K. Gugino; María del Mar Jiménez-Gasco Applied and Environmental Microbiology 2014. doi:10.1128/aem.02590-14

Other claims from this paper (8)

tobacco 13

Show all 13 →
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

The highly repetitive sequence was significantly reduced versus the two other sequence types.

Outcome
highly repetitive sequencee0
Direction
reductione0
Comparator
the two other sequencese0

Verbatim

e0

“the highly repetitive sequence varied independently and displayed a significant reduction in comparison with the two other sequences”

✓ located verbatim in the source · abstract, characters 495–627
t0

“tobacco plants”

✓ located verbatim in the source · title, characters 43–57

Title

Genome modifications in protoplast-derived tobacco plants: Contents of repetitive DNA sequences

B. Vyskot; J. Reich; J. Fajkus; et al. Biologia Plantarum 1991. doi:10.1007/bf02897717

Other claims from this paper (4)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Four tobacco genomic clones fell into two sequence types.

Gene
par At0
Outcome
two typese0

Verbatim

e0

“They were classified into two types on the basis of their nucleotide sequences.”

✓ located verbatim in the source · abstract, characters 214–293
t0

“Tobacco par A”

✓ located verbatim in the source · title, characters 53–66

Title

Organ-Specific and Auxin-Inducible Expression of Two Tobacco par A-Related Genes in Transgenic Plants

Y. Niwa DNA Research 1994. doi:10.1093/dnares/1.5.213

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Tobacco nsLTPs fall into eight sequence-based types.

Gene
nsLTPse0
Outcome
eight types, including type I, II, III, IV, V, VII, VIII, and XIIIe0

Verbatim

e0

“nsLTPs in tobacco could be divided into eight types, including type I, II, III, IV, V, VII, VIII, and XIII, according to the interval and sequence similarity between the eight cysteines”

✓ located verbatim in the source · abstract, characters 584–769

Title

Identification and analysis of non-specific lipid transfer protein family in tobacco

Peng LI; Che LIU; Hao SONG; et al. ACTA AGRONOMICA SINICA 2021. doi:10.3724/sp.j.1006.2021.04240

Other claims from this paper (8)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two sequence types occurred in Mali, with ST2 in four provinces and ST3 only in Bamako.

Taxon
CitrusCitruse1
Interactor
Xanthomonas citri pv. CitriXanthomonas citri pv. citrie1pathogen
Outcome
two Sequence Types (ST)e0
Setting
Malie0

Verbatim

e0

“the presence in Mali of two Sequence Types (ST): ST2 in 4 provinces and ST3, only present in Bamako.”

✓ located verbatim in the source · abstract, characters 473–573
e1

“Citrus is threatened by various diseases included Asiatic Citrus Canker, caused by the bacterium Xanthomonas citri pv. Citri (Xcc).”

✓ located verbatim in the source · abstract, characters 0–131

Title

The emergence of Xanthomonas citri pv. citri in Mali results from at least two independent introductions

Alice Leduc; Christian Vernière; Virginie Ravigné; et al. Agritrop (Cirad) 2013

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 55 citrus isolates of Xylella fastidiosa subsp. pauca defined three similar sequence types dominated by ST11 (85%).

Taxon
citrusCitruse0
Material
55 citrus isolatese1
Interactor
Xylella fastidiosa subsp. paucaXylella fastidiosa subsp. paucae0pathogen
Outcome
sequence typese1
Value
85%e1
Qualifier
dominated by ST11e1

Verbatim

e0

“We used multilocus sequence typing (MLST) to study this issue in Xylella fastidiosa subsp. pauca from Brazil, a bacterium causing citrus variegated chlorosis (CVC) and coffee leaf scorch (CLS)”

✓ located verbatim in the source · abstract, characters 215–407
e1

“All 55 citrus isolates typed (plus one coffee isolate) defined three similar sequence types (STs) dominated by ST11 (85%)”

✓ located verbatim in the source · abstract, characters 409–530

Title

Detecting Genetic Introgression: High Levels of Intersubspecific Recombination Found in Xylella fastidiosa in Brazil

Leonard Nunney; Xiaoli Yuan; Robin E. Bromley; et al. Applied and Environmental Microbiology 2012. doi:10.1128/aem.01126-12

Other claims from this paper (5)
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

CVdⅡ sequence differed from three reported subtypes, suggesting a new subtype.

Taxon
CitrusCitrust0
Interactor
CVdⅡe0pathogen
Outcome
sequence of CVdⅡe0
Direction
differente0
Comparator
three sub-types reportede0

Verbatim

e0

“The sequence of CVdⅡ was different from all of the three sub-types reported, implying the identification of a new subtype”

✓ located verbatim in the source · abstract, characters 832–953
t0

“Citrus”

✓ located verbatim in the source · title, characters 44–50

Title

Molecular Detection and Characterization of Citrus Viroids

Shu Guang-ping Zhongguo nongye Kexue 2008

Other claims from this paper (5)

Nicotiana benthamiana 12

Show all 12 →
Observationobservedoriginal resultmeasured

Claim · model-written summary

Deletions and insertions were the most common types of defective viral genomes.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Outcome
deletions and insertions being the most common typese3

Verbatim

t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 120–141
e3

“with deletions and insertions being the most common types”

✓ located verbatim in the source · abstract, characters 1157–1214

Title

Intra-Host Citrus Tristeza Virus Populations during Prolonged Infection Initiated by a Well-Defined Sequence Variant in Nicotiana benthamiana

Tathiana Ferreira Sa Antunes; José C. Huguet-Tapia; Santiago F. Elena; et al. Viruses 2024. doi:10.3390/v16091385

Other claims from this paper (4)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Four types of defective viral genomes were found in all samples of CTV-T36-infected Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Outcome
types of DVGse2
Value
four typese2

Verbatim

t0

“Nicotiana benthamiana”

✓ located verbatim in the source · title, characters 120–141
e2

“four types of DVGs—deletions, insertions, and copy- and snap-backs—were found in all the samples”

✓ located verbatim in the source · abstract, characters 1059–1155

Title

Intra-Host Citrus Tristeza Virus Populations during Prolonged Infection Initiated by a Well-Defined Sequence Variant in Nicotiana benthamiana

Tathiana Ferreira Sa Antunes; José C. Huguet-Tapia; Santiago F. Elena; et al. Viruses 2024. doi:10.3390/v16091385

Other claims from this paper (4)
Observationobservedoriginal resultmeasured

Claim · model-written summary

At 4 dpi, all strains downregulated PDF1.2 in Nicotiana benthamiana

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Interactor
Xylella fastidiosaXylella fastidiosae0pathogen
Outcome
PDF1.2 genee2
Direction
downregulatede2

Verbatim

e0

“The aggressiveness of 17 Xylella fastidiosa strains”

✓ located verbatim in the source · abstract, characters 0–51
e1

“surrogated host Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 132–169
e2

“downregulated the PDF1.2 gene”

✓ located verbatim in the source · abstract, characters 1241–1270

Title

Aggressiveness of Subspecies and Sequence Types of Xylella fastidiosa and Plant Response in Nicotiana benthamiana

Aniol Buisac; Beatriz Gascón; Emilio Montesinos; et al. Phytopathology 2026. doi:10.1094/phyto-11-25-0366-r

Other claims from this paper (10)

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